PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992509.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 445aa    MW: 50820.9 Da    PI: 6.3317
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.7e-21123211186
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k+lt+sd+++   +++pkk ae++     +++++ +++l+l+d++gr+W +++ yr++++r v+t+GW  Fv +++L +gD ++F + +
  XP_024992509.1 123 FCKILTTSDTGSA--FSVPKKLAENClppldMSQPQPKQELILKDLHGRTWHFTHVYRGNPRRQVITAGWTTFVASKRLVAGDALIFVRAW 211
                     99********998..6*******999****9555556679***********************************************8555 PP
2Auxin_resp22.93.8e-092122722383
      Auxin_resp  23 eFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 
                      Fvv+++k++ a  ++++ G+ + m++ +e+ s++++  +G+    +d++  +Wp+S Wrs+k
  XP_024992509.1 212 PFVVRLHKYVVANAINFA-GSNIMMKLASEEDSHIEIrhTGVALEETDISE-EWPGSTWRSIK 272
                     5***********998885.77777777666666555544999999999666.********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    
MASSSSHNGI KNELYKELWM ACAGPLVDIP VQGERVFYFP QGHIEQLELE DSMSDELMNQ  60
QISKLDLPYK MLCRVINFDL KVEPETDEVY AIIRLHPFQE VVHDTARYGH PPLEEPKLSF  120
RSFCKILTTS DTGSAFSVPK KLAENCLPPL DMSQPQPKQE LILKDLHGRT WHFTHVYRGN  180
PRRQVITAGW TTFVASKRLV AGDALIFVRA WPFVVRLHKY VVANAINFAG SNIMMKLASE  240
EDSHIEIRHT GVALEETDIS EEWPGSTWRS IKVRWKKVVD QRSTIRLPER VSRWLLELAE  300
DGRSNVRELE AGSSWSRHKR LRIYEHGPMS HGGNANWGES VHAIPWSSTG LVDEGKECEN  360
PQVLRLFGVD IQLVPYSSGH VMVQAQGNDL VQTVDLSLLE GYEELKKELE KIFKIKGELH  420
GHQKWEVVYE DGDGDLLVLA DKPWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.18e-76ARF family protein