PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992475.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 708aa    MW: 78533.2 Da    PI: 6.8696
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.91.8e-1033457072374
            GRAS   2 velLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++L+++A+ ++sg++  laq +Larl+++ sp g+p+ R+a+yf+eAL+  l++  +++  +++p++++  + + ++ a+k fse+sP+l+f++
  XP_024992475.1 345 IDQLFKAADLIQSGNNPiLAQGILARLNHQLSPIGKPFDRAAFYFKEALQLLLHSILNNIHPQITPTASP-FSLIFKIGAYKSFSEISPFLQFAN 438
                     689**********888769************************************999999888887775.679********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t+Nqa+le+++g +++HiiDfdi++G+QW++L+q+La R++g  sl+iT+++sp+++++ el  t+e+L +fA+e++v f+f+++   ++ + +
  XP_024992475.1 439 FTCNQALLESLNGFDQIHIIDFDIGYGGQWASLMQELALRNNGVSSLKITAFASPSTHDQLELGLTRENLIHFASEIRVGFDFEIV-NIDVLASS 532
                     *************************************************************************************6.44555566 PP

            GRAS 191 leeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseer 282
                      ++L  +v+  Ea+aVnl +  h + +++++++s    vL++vk+lsPk+vv v++ +d+++ +F +++++al+ ys l++sl +++   + +  
  XP_024992475.1 533 SWSLpfHVSDTEAIAVNLPI--HVFSNHQTQIPS----VLRFVKNLSPKIVVSVDRGCDRTDLPFSNHLIHALQSYSNLLESLnAVN--MNLDSL 619
                     7877558888********99..666655666666....*********************************************5555..466888 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+Er+l++++i+++v  +        e+ ++Wr  + +aGF+p+ +s+++++qa++l+++++++ ++ve+++  lvl+W++r+Lvs+SaWr
  XP_024992475.1 620 QKIERFLVQPAIEKIVLGRYLF----PEKTQHWRTLFLSAGFSPLLFSNFTESQAECLVKRTPVRDFHVEKRQSLLVLCWQRRELVSASAWR 707
                     99***************99998....9************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    
MTIRYQNATL TSVQQAILYA SKRGMPLPFE FEGKGVVLLQ DFAVNPFVNK KRKKKYINEP  60
TSVLDSINTI PSPPASTSTL SSSLGGGDTA GVAAFSSKWP PPENQETSTS NAGVVDVHQF  120
QQPSLDEKCV GMVDWETGES GQDQAMLRWI MGDVEDPSMG LNKVLHGNGG GGGGGAVDFE  180
FNGGFGVVDQ GFSIGLDSGN QIVNLSQISN KFTNDKTGLS TNPQLPPSPP QAMFSNHHHH  240
HHSQNQIFSP LNEPQMLPFD IKPQMFNPQL LINQSQPFEH QLLMPPQPKR HNPGSIEIPK  300
NPFLDSGQNP LQLLQKSPSM KKMAAINEVG LGNQNHHHHQ QQGIIDQLFK AADLIQSGNN  360
PILAQGILAR LNHQLSPIGK PFDRAAFYFK EALQLLLHSI LNNIHPQITP TASPFSLIFK  420
IGAYKSFSEI SPFLQFANFT CNQALLESLN GFDQIHIIDF DIGYGGQWAS LMQELALRNN  480
GVSSLKITAF ASPSTHDQLE LGLTRENLIH FASEIRVGFD FEIVNIDVLA SSSWSLPFHV  540
SDTEAIAVNL PIHVFSNHQT QIPSVLRFVK NLSPKIVVSV DRGCDRTDLP FSNHLIHALQ  600
SYSNLLESLN AVNMNLDSLQ KIERFLVQPA IEKIVLGRYL FPEKTQHWRT LFLSAGFSPL  660
LFSNFTESQA ECLVKRTPVR DFHVEKRQSL LVLCWQRREL VSASAWRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15054KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-151GRAS family protein