PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992420.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 702aa MW: 78101.7 Da PI: 4.8023

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	1e-05	170	189	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C G++C+F H XP_024992420.1 170 ICNFFAK-GWCIKGNSCRFRH 189 6****.*********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MPTSTAVSPT AVTADDQSPT ASDSEEYEYE EIEVEEEIEV EEEVSEEDDE EGVESDEVIE 60 TGDGLSPPIE DRDHEKNDDG KAPQCDGGMM SAETNNTFNE TSKEVTGGDS LISLYKSNKI 120 PHSEEETTKM SAKDVNDTQK EPRLEAPLIR PRSSSPAVEI NEGNKRPALI CNFFAKGWCI 180 KGNSCRFRHI KESMNANDQQ KENSVAAYQK SEPQDDEGLR DGVERSGLAT PVAVPTTTCS 240 SETILLQDTK ESPKHKINPK ESQKEDPVNI SLVDDDKETG GSRENQYLDK EHPPVNANSL 300 LHETSSSNPF TGSDIRKSNW VSSYATSMEE LDGREYQFRF HNLKVPITNY SPNYGSSSFQ 360 STSRISPSNH SSMWPRTSTL LSSSSWNSDS FGTVKHLGGD RELHPIFRPN VTPFSGSESE 420 HLYRDKDVLP HSAGFTTKFS SYDWEPSKPF RSSFLISQGI YSPASQYDPI RDSIEQPKDG 480 DKISKFSSSS RTPSISSIHS LMDVNAPLKE KFGMDHGSDR LSLASHVNGH DNAMDVNSNA 540 RELGTVDTKQ ENTKREAKGK KHPIHAHVGD AIQSRELQVN PEFVQENDGP SKEIKIGDDS 600 SRYRGQDFDI EGEGTRESKA LKHFRAALIE FVKELVKPTW RDGKLSKDAH KVIVKKAVDK 660 VINTLPAEHI PSMQESIDIY LSSSQPKIVK LVEGYIEKYG KL

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MPTSTAVSPT AVTADDQSPT ASDSEEYEYE EIEVEEEIEV EEEVSEEDDE EGVESDEVIE  60
TGDGLSPPIE DRDHEKNDDG KAPQCDGGMM SAETNNTFNE TSKEVTGGDS LISLYKSNKI  120
PHSEEETTKM SAKDVNDTQK EPRLEAPLIR PRSSSPAVEI NEGNKRPALI CNFFAKGWCI  180
KGNSCRFRHI KESMNANDQQ KENSVAAYQK SEPQDDEGLR DGVERSGLAT PVAVPTTTCS  240
SETILLQDTK ESPKHKINPK ESQKEDPVNI SLVDDDKETG GSRENQYLDK EHPPVNANSL  300
LHETSSSNPF TGSDIRKSNW VSSYATSMEE LDGREYQFRF HNLKVPITNY SPNYGSSSFQ  360
STSRISPSNH SSMWPRTSTL LSSSSWNSDS FGTVKHLGGD RELHPIFRPN VTPFSGSESE  420
HLYRDKDVLP HSAGFTTKFS SYDWEPSKPF RSSFLISQGI YSPASQYDPI RDSIEQPKDG  480
DKISKFSSSS RTPSISSIHS LMDVNAPLKE KFGMDHGSDR LSLASHVNGH DNAMDVNSNA  540
RELGTVDTKQ ENTKREAKGK KHPIHAHVGD AIQSRELQVN PEFVQENDGP SKEIKIGDDS  600
SRYRGQDFDI EGEGTRESKA LKHFRAALIE FVKELVKPTW RDGKLSKDAH KVIVKKAVDK  660
VINTLPAEHI PSMQESIDIY LSSSQPKIVK LVEGYIEKYG KL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-17	C3H family protein