PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992009.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 286aa    MW: 31495 Da    PI: 7.0724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10172219455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+ Lq
  XP_024992009.1 172 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQALQ 219
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MDPPVMMNGG DFRSGNSASS LCNLADIVPF HVNFGGSVGN SASFGWGQLS GNSENNSNNN  60
SGSSVHAYMN HGDHVSVDDP MDLDQRGSNF HSKKQREEDD SPKRVSSSSP SNGMSDCDGK  120
RLRMLGLGNE NFEPKAKADG GFGKLAENHI KPAESKQDYI HVRARRGQAT DSHSLAERAR  180
REKISERMKI LQDLVPGCNK VIGKALVLDE IINYIQALQR QVEFLSMKLE AVTSRSNLNP  240
EGFPSKDLGH RTLDMPFSQP TTREFSRTSS PEWLHMQIGG SFERTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-71bHLH family protein