PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991963.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 295aa MW: 31847.6 Da PI: 8.0615

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.3	3.4e-35	53	123	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 + ++ ++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ XP_024991963.1 53 PPRRATKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIKATGTGTVPALAV 123 56789**********************************************************88887322 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MANTNFQSED AQILSTSDPP VLKEEPADND LEASIPVAMV PISMSQKQMP VAPPRRATKD 60 RHTKVEGRGR RIRMPAACAA RIFQLTRELG HKSDGETIRW LLEHAEPAII KATGTGTVPA 120 LAVSVNGTLR IPTTPNEEEG DVKRRKRGCN SEFYDLNDSA TSNFAPIAPI APRAVVPLWT 180 MCAPPTTGFH GGTIFMIPPC GATGPTICHQ PQLWAIPTGA TPVLDVPQRP ISNYISAMKP 240 VVCIGGSAVD TPAVSSGSIS TTRRREMVKD LSLEIGEKRE LQFMEGCSTD KTPMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-63	TCP family protein