PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990837.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 932aa MW: 104269 Da PI: 6.2302

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.6	8.5e-52	14	127	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e + rwlk+ e++ iL++fe+ +lt+e++++p+sgsl+L+n++++r+frkDG+sw++kkdg+ v E+he+LKvg+ve+l+cyYah+e np+fqrr XP_024990837.1 14 EaHIRWLKPGEVLFILQHFEESQLTHEPPQKPPSGSLFLFNKRVLRFFRKDGHSWRRKKDGRNVGEAHERLKVGNVEALNCYYAHGEVNPNFQRR 108 4488***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhyle 116 +yw+L+ ++++ivlvhy++ XP_024990837.1 109 SYWMLDPSMDHIVLVHYRD 127 ***************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence
MMTSGYNIMD LIREAHIRWL KPGEVLFILQ HFEESQLTHE PPQKPPSGSL FLFNKRVLRF 60 FRKDGHSWRR KKDGRNVGEA HERLKVGNVE ALNCYYAHGE VNPNFQRRSY WMLDPSMDHI 120 VLVHYRDITM GGHSAGPIST VSTGSSTLIQ SSNSYVTQFT QSAAAFSQFR EPYESTSSPG 180 SVEVSSDVVI KSNGTSPLTL AEVTEEIGGS PNFEIDQALQ RIREQLSLDE DNLKDIGAFY 240 SENEISNESG ITVNEQDYGG SGGMHDGSIN YTSEQYPVGD GSQKNFVYPS DRNGVLLPQP 300 RRDPVEEQEK YNYGYTSANN DSSILLPHEL EDFKFPAYTP ARNLSDSYPD FYSTMFGQGQ 360 GGMPLESASS LTIAQEQKFT IREIAPQWGY ASEPTKVLVI GTFTCDLAKR EWYCMFGDTE 420 VPVEIIQEGV LCCYAPPCLP GKVSLCITSG NRESCSEIRE FEYCDKPSSY IHTNQTDKKF 480 SRSSEESLLL VRFVQMLLSD QVRHKEGKTR IDLLVSSMAS EDSWSQVIEA LLDGSLASSN 540 TTDWLLEELL KDKLQQWLSS RLQDESAVPA LSKREQGIIH MVSGLGFGWA LTPILNSGVG 600 VNFRDINGWT ALHWAARFGR EKMVAELLAS GASAGAVTDP SQLDPTGKTP ASIAATCGHK 660 GLAGYLSEVS LTSHPTLKLQ QSELSRNSAD LEAERTVDSI SKLNLVSDED PSLRDTLAAV 720 RNTAQAAARI QSAFRAHSFR KRQQKESTRY ATGDEYGILP SDIEGLSAAS KLTFRNGNDH 780 NAALSIQKKY RGWKGRKDFL ALRQKVVKIQ AHVRGHQVRK NYKVFCWAVG VVEKVVLRWR 840 RKGVGLRGFK QELGTLDDGE DEDIVKVFRK QNVDVSIDEA VSRVLSMVDS QQARQQYRRM 900 LQKYRQAKAE HERLESEAAS TSENEELNKF IM

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence

MMTSGYNIMD LIREAHIRWL KPGEVLFILQ HFEESQLTHE PPQKPPSGSL FLFNKRVLRF  60
FRKDGHSWRR KKDGRNVGEA HERLKVGNVE ALNCYYAHGE VNPNFQRRSY WMLDPSMDHI  120
VLVHYRDITM GGHSAGPIST VSTGSSTLIQ SSNSYVTQFT QSAAAFSQFR EPYESTSSPG  180
SVEVSSDVVI KSNGTSPLTL AEVTEEIGGS PNFEIDQALQ RIREQLSLDE DNLKDIGAFY  240
SENEISNESG ITVNEQDYGG SGGMHDGSIN YTSEQYPVGD GSQKNFVYPS DRNGVLLPQP  300
RRDPVEEQEK YNYGYTSANN DSSILLPHEL EDFKFPAYTP ARNLSDSYPD FYSTMFGQGQ  360
GGMPLESASS LTIAQEQKFT IREIAPQWGY ASEPTKVLVI GTFTCDLAKR EWYCMFGDTE  420
VPVEIIQEGV LCCYAPPCLP GKVSLCITSG NRESCSEIRE FEYCDKPSSY IHTNQTDKKF  480
SRSSEESLLL VRFVQMLLSD QVRHKEGKTR IDLLVSSMAS EDSWSQVIEA LLDGSLASSN  540
TTDWLLEELL KDKLQQWLSS RLQDESAVPA LSKREQGIIH MVSGLGFGWA LTPILNSGVG  600
VNFRDINGWT ALHWAARFGR EKMVAELLAS GASAGAVTDP SQLDPTGKTP ASIAATCGHK  660
GLAGYLSEVS LTSHPTLKLQ QSELSRNSAD LEAERTVDSI SKLNLVSDED PSLRDTLAAV  720
RNTAQAAARI QSAFRAHSFR KRQQKESTRY ATGDEYGILP SDIEGLSAAS KLTFRNGNDH  780
NAALSIQKKY RGWKGRKDFL ALRQKVVKIQ AHVRGHQVRK NYKVFCWAVG VVEKVVLRWR  840
RKGVGLRGFK QELGTLDDGE DEDIVKVFRK QNVDVSIDEA VSRVLSMVDS QQARQQYRRM  900
LQKYRQAKAE HERLESEAAS TSENEELNKF IM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein