PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990539.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 230aa    MW: 25412.7 Da    PI: 4.6523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.3e-29138196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs+fpr+YY+C+++  C ++k+ve+s+ dp+v+++ Y+geH h+
  XP_024990539.1 138 NDTWAWRKYGQKPIKGSPFPRNYYKCSTTkACGARKQVEQSHMDPTVFIVSYSGEHIHP 196
                     8*************************99889***************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MDDEWDLYAV VRSCTTNSTD AATSGNVTVD DYEDGYDYNM ETVADMINPY SYSNSGDNPS  60
EGLEEVYKEG CSQRLPTTTT TTITTTTTTT GGFFDEQEQP SVSFDASDHS LSNESPSKKR  120
KNQQKKMVVE LTQEELCNDT WAWRKYGQKP IKGSPFPRNY YKCSTTKACG ARKQVEQSHM  180
DPTVFIVSYS GEHIHPRPTH RSPLAGSTRS NKFTPPPPDL DAAGGGDGGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-47WRKY family protein