PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990039.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Nin-like

Protein Properties

Length: 815aa MW: 90844 Da PI: 6.5094

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.3e-29	517	567	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_024990039.1 517 EKTITLEMLRQHFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 567 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence
MNDNVFTFEN PSDSLMDFDY MDELLLDGCW LQATDGSDPL NNNNPSNSTP LLDPSFQWPN 60 LESTIGEPVS KDILLAPEGN PSKSHLTNLI GSPADQSENL SELSKRWWIG PRASSSPSLS 120 VMEKLIYAID NIKHYTVDKN VLIQVWLPET RDGKKVLSTS QRLFSLELNC PRLSNYRSIS 180 EGYHFPAEGD AKESVGLPGR VFMGKVPEWT PDVRFFKIEE YPRVSHAQEQ DVRGSVAVPV 240 FDQDIKICIG VVEVVMTTQK SNYNLEIQSV CKALEAVELR SSEDSNTQTV KVSKSFYHPA 300 IPEILETLKS ACMMHNLPLA QTWIPCIQQG GKGGCRYSSD NLIHCISTVD SASYLSDPRF 360 KDFQEACSQH HLFKGQGVVG KAFTTNEPCY SPDVTLYTKT EYPLAHHARI FDLHAEVAIR 420 LRTTYAASID FVLEFFLPVD CKNHKDQMGV VDSLLMIIKK VCGSLRIVTE MELQEEEGLL 480 MVSDTEPVQK TQETAFGGAV SGLGLGMEKR RAGAKMEKTI TLEMLRQHFA GSLKDAAKNI 540 GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS LRKIQLVMDS VHGGSGSFQI ESFYSNFPKL 600 ASPGPSKTNP IPFSASKIET FDSKAADGAT ATSCSQGSSS SQSFSGGTHQ VQQVDEDTVE 660 GALKRTKSDA DIHTFSASSD QDQEPKLFPR SHSHKSIHEP PKCQNLPPKP RLMPDGHLRR 720 VKVTFGEEKV RFRLQKDWGY NDLLQEIGKR FRLNDISGLH LKYLDDDSEW VLLTCDADLE 780 ECIDVYRSFK SGTIRLALRE PQLRVGSSLG SNAPL

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence

MNDNVFTFEN PSDSLMDFDY MDELLLDGCW LQATDGSDPL NNNNPSNSTP LLDPSFQWPN  60
LESTIGEPVS KDILLAPEGN PSKSHLTNLI GSPADQSENL SELSKRWWIG PRASSSPSLS  120
VMEKLIYAID NIKHYTVDKN VLIQVWLPET RDGKKVLSTS QRLFSLELNC PRLSNYRSIS  180
EGYHFPAEGD AKESVGLPGR VFMGKVPEWT PDVRFFKIEE YPRVSHAQEQ DVRGSVAVPV  240
FDQDIKICIG VVEVVMTTQK SNYNLEIQSV CKALEAVELR SSEDSNTQTV KVSKSFYHPA  300
IPEILETLKS ACMMHNLPLA QTWIPCIQQG GKGGCRYSSD NLIHCISTVD SASYLSDPRF  360
KDFQEACSQH HLFKGQGVVG KAFTTNEPCY SPDVTLYTKT EYPLAHHARI FDLHAEVAIR  420
LRTTYAASID FVLEFFLPVD CKNHKDQMGV VDSLLMIIKK VCGSLRIVTE MELQEEEGLL  480
MVSDTEPVQK TQETAFGGAV SGLGLGMEKR RAGAKMEKTI TLEMLRQHFA GSLKDAAKNI  540
GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS LRKIQLVMDS VHGGSGSFQI ESFYSNFPKL  600
ASPGPSKTNP IPFSASKIET FDSKAADGAT ATSCSQGSSS SQSFSGGTHQ VQQVDEDTVE  660
GALKRTKSDA DIHTFSASSD QDQEPKLFPR SHSHKSIHEP PKCQNLPPKP RLMPDGHLRR  720
VKVTFGEEKV RFRLQKDWGY NDLLQEIGKR FRLNDISGLH LKYLDDDSEW VLLTCDADLE  780
ECIDVYRSFK SGTIRLALRE PQLRVGSSLG SNAPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein