PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989644.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 308aa    MW: 33962.6 Da    PI: 4.6512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-1991140255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr++  +g+WvAeIr+p   + r +r +lg+fg+a eAa a+++a+++++g
  XP_024989644.1  91 NFRGVRQRT-WGKWVAEIREP---N-RgRRLWLGTFGSAVEAALAYDEAARAMYG 140
                     69****999.**********8...3.35************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MSSGFTERNT EMGLLNQTSN TSSLPMDYPR KRKTRSRRDA PKNVAATLAK WIEYNNIDSS  60
DGKPKTRKAP AKGSKKGCMK GKGGPDNSRC NFRGVRQRTW GKWVAEIREP NRGRRLWLGT  120
FGSAVEAALA YDEAARAMYG PSARLNLPNC RSMDDYYMLL ANPTSSCDST TTCDYSGGGA  180
AHNSNVASDG FEESTQCGLQ VEHEPVVVKE EPIEEKKDVG FCIGDGNYLQ SFSGDEMIDM  240
DELLGIVDQT DDFVSNSNHE PGSGNATDEP WFDNKPDPCD YSLDFLKPGR PEDCSFMLEE  300
LGLGLDPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13239RKTRSRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-34ERF family protein