PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989539.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 336aa MW: 38067.4 Da PI: 9.798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	152	199	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L llP + kK++Ka++Le A +YI +Lq XP_024989539.1 152 QEHVLAERKRREKLAQRFISLSALLPGL-----KKMDKASVLEDASKYIVQLQ 199 67999*********************.....9***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MDIPSMVWLP ELEMEEPSRS MKQHQQPCPY YSDSVDSFSS ERFKGYPNMV TVNQSIQVSS 60 INGDQDKQQD YRPTKSSPFS PSYGSLSNTF TISFGDPTSP QETNPYQFYR GSKLKYLDAV 120 TPKEEKNLND FLGSVEVTGR VRSTRRNHRQ AQEHVLAERK RREKLAQRFI SLSALLPGLK 180 KMDKASVLED ASKYIVQLQT RVKELQETSV KGKDIIHESV VPIRRSKFSG RHEDNGASSS 240 NDTNYLPSSS TYNPEIKART SGSKILVRIF CGRSSALVLK TLAEMQRLHI TIICCSVLPF 300 SNTTQLITIT AQMSDEMVIT RKYIVKCLKL ALSKFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	ERKRRE
2	159	164	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-41	bHLH family protein