PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989064.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 408aa MW: 45602.9 Da PI: 6.5636

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	122	167	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_024989064.1 122 RGHWRPAEDVKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 167 899***************************.*********996 PP
2	Myb_DNA-binding	51.2	3e-16	174	217	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W++ ar ++ gRt++ +k++w+ XP_024989064.1 174 RRAFSEEEEERLMTAHRLYGNK-WALMARLFP-GRTDNAVKNHWHV 217 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MGMVFADSFG SLSINNDNSS KINDHFIYGG HLLTTTTSSS SSQPSSSTHS TSTNFNEDDQ 60 DHEHDDDEEE EEEEREEEEE EDIDLNLSGS YSLNGNIDSH HHHHHNGKTR PGGSGQSKTS 120 ARGHWRPAED VKLKELVALY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFSEE 180 EEERLMTAHR LYGNKWALMA RLFPGRTDNA VKNHWHVIMA RKYREQSNAY RRRKVIISQS 240 QSQTSTATPP PLPPPPPPPP VSATVPITHN GCIHQLPPFG VISGPKNNSE LMMGMFNSTN 300 NHHNIPWENH SSSSSSSNTS WMMDATTTTN PINNFHHHHH ALHPPLMTAA MNHQYYHHHL 360 YNNSTTTTSS SSSYSSIAAT AAAPPPPPPE VNNNLSPPFI DFLGVGAI

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MGMVFADSFG SLSINNDNSS KINDHFIYGG HLLTTTTSSS SSQPSSSTHS TSTNFNEDDQ  60
DHEHDDDEEE EEEEREEEEE EDIDLNLSGS YSLNGNIDSH HHHHHNGKTR PGGSGQSKTS  120
ARGHWRPAED VKLKELVALY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFSEE  180
EEERLMTAHR LYGNKWALMA RLFPGRTDNA VKNHWHVIMA RKYREQSNAY RRRKVIISQS  240
QSQTSTATPP PLPPPPPPPP VSATVPITHN GCIHQLPPFG VISGPKNNSE LMMGMFNSTN  300
NHHNIPWENH SSSSSSSNTS WMMDATTTTN PINNFHHHHH ALHPPLMTAA MNHQYYHHHL  360
YNNSTTTTSS SSSYSSIAAT AAAPPPPPPE VNNNLSPPFI DFLGVGAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	4e-74	MYB family protein