PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988860.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family BBR-BPC
Protein Properties Length: 305aa    MW: 33006.6 Da    PI: 10.1102
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind313.37.9e-9613051301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaav.....aerd...........maflqrdkalaernkal 74 
                     mdddg + rn+gyyep+  +ke+lglqlms +   rd+k+    re  + l  + +a      +++            m++ +r+++++      
  XP_024988860.1   1 MDDDGLNMRNWGYYEPS--FKEHLGLQLMSPLGdHRDTKPflsaRETPVILNPNGGAAtaapyHHHArncvvseapipMHY-MRESWIQR----- 87 
                     9*****99*******99..*************9789***9**995555533333223222222333355788888888888.88888887..... PP

       GAGA_bind  75 verdnkllalllvenslasalpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
                         ++ll++l+ + +  +al + +++++  ++++ l+ +++   +++d+a+ ++      +       ++a  +  +kkr+++++pk+++akk+
  XP_024988860.1  88 ----ERLLHMLPGNPN--FALLPDTSASNSIHMMQPLDSTKDpgMNVDDNAAIIKGGG---SSGGGAGGDDAGGSGPVKKRSSGTNPKTPRAKKA 173
                     ....556666664444..3332333333444444444443333334555555433333...2223345677888999999*************** PP

       GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
                     kk ++++k++ ++ +  +rsk  k+++d+v+ng+++D+s++P+PvC+CtG+++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmSq
  XP_024988860.1 174 KKGPAVPKENGNPTG--QRSKVVKRNMDVVINGIDMDISGIPIPVCTCTGTPQQCYRWGSGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSQ 266
                     **9999999999888..79**************************************************************************** PP

       GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     gafkk+LekLa+eGy++ n++DL+ hWAkHGtnkfvtir
  XP_024988860.1 267 GAFKKVLEKLASEGYNFVNAIDLRAHWAKHGTNKFVTIR 305
                     **************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MDDDGLNMRN WGYYEPSFKE HLGLQLMSPL GDHRDTKPFL SARETPVILN PNGGAATAAP  60
YHHHARNCVV SEAPIPMHYM RESWIQRERL LHMLPGNPNF ALLPDTSASN SIHMMQPLDS  120
TKDPGMNVDD NAAIIKGGGS SGGGAGGDDA GGSGPVKKRS SGTNPKTPRA KKAKKGPAVP  180
KENGNPTGQR SKVVKRNMDV VINGIDMDIS GIPIPVCTCT GTPQQCYRWG SGGWQSACCT  240
TTISMYPLPM STKRRGARIA GRKMSQGAFK KVLEKLASEG YNFVNAIDLR AHWAKHGTNK  300
FVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.12e-89BBR-BPC family protein