PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987142.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 348aa MW: 39918.4 Da PI: 6.813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	182	201	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_024987142.1 182 FSCPLCFKTFNRYNNMQMHM 201 89*****************9 PP
2	zf-C2H2	12.3	0.00053	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ XP_024987142.1 266 FMCRKCSKAFAVRGDWRTHEKNC 288 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MSNDHQPYSR HFNGSWFNLN STQHLSSLYS SSPPPPFSYA SFSRYYEPSP PSPPLREALP 60 LLSLSPARRF NHDLEYPFDT TNDSCASRSM EIDPNSMPSD DQETVTVALH LGLPSPTFSE 120 ADLISRLSTD THNNIESDHK QVEKEEEEEE GTISNGYLTS TLNKGQYWIP TPTQILIGPT 180 QFSCPLCFKT FNRYNNMQMH MWGHGSQYRR GPESLRGIQP TAMLRLPCYC CAPRCHNNID 240 HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CSKAFAVRGD WRTHEKNCGK LWYCSCGSDF 300 KHKRSLKDHI KAFGNGHAAY GIDDESCFEF EEEEAASEID HQDNDHLQ

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MSNDHQPYSR HFNGSWFNLN STQHLSSLYS SSPPPPFSYA SFSRYYEPSP PSPPLREALP  60
LLSLSPARRF NHDLEYPFDT TNDSCASRSM EIDPNSMPSD DQETVTVALH LGLPSPTFSE  120
ADLISRLSTD THNNIESDHK QVEKEEEEEE GTISNGYLTS TLNKGQYWIP TPTQILIGPT  180
QFSCPLCFKT FNRYNNMQMH MWGHGSQYRR GPESLRGIQP TAMLRLPCYC CAPRCHNNID  240
HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CSKAFAVRGD WRTHEKNCGK LWYCSCGSDF  300
KHKRSLKDHI KAFGNGHAAY GIDDESCFEF EEEEAASEID HQDNDHLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-121	C2H2 family protein