PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986810.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

E2F/DP

Protein Properties

Length: 355aa MW: 38904.4 Da PI: 8.4682

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	85.8	3.2e-27	103	184	3	71
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g XP_024986810.1 103 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsntdqtpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 184 689*****...*999***************************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MVRMGSNDNL ENVVGNTNPF SRGGGATRSW GTTASGQSVS TSGSVGSPST RSEAAMAATP 60 ASENTFLRLN HLDIHADDAG SQGAAGNKKK RRGQRTTAGD KGGRGLRQFS MKVCEKVESK 120 GRTTYNEVAD ELVAEFADPS NTDQTPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI 180 QWRGLPRTSL NDIEELKSER LALKNRIDKK TAYLRELEDQ HVGLQNLVRR NEQLYGSGNA 240 PTGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCDGSNN 300 NNVCREGGGA GSSMFEGRVP LPPPPQPPRS TMAHGRPPPS PPLPGILKGR VKHEH

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MVRMGSNDNL ENVVGNTNPF SRGGGATRSW GTTASGQSVS TSGSVGSPST RSEAAMAATP  60
ASENTFLRLN HLDIHADDAG SQGAAGNKKK RRGQRTTAGD KGGRGLRQFS MKVCEKVESK  120
GRTTYNEVAD ELVAEFADPS NTDQTPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI  180
QWRGLPRTSL NDIEELKSER LALKNRIDKK TAYLRELEDQ HVGLQNLVRR NEQLYGSGNA  240
PTGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCDGSNN  300
NNVCREGGGA GSSMFEGRVP LPPPPQPPRS TMAHGRPPPS PPLPGILKGR VKHEH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	92	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-148	E2F/DP family protein