PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986751.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 674aa MW: 73750.1 Da PI: 7.6244

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.6	2.4e-23	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_024986751.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 218 89**************************996555555..89*******************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_024986751.1 219 NGDLCVGIRRA 229 8999**997 PP
2	Auxin_resp	113.5	2e-37	290	373	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++a+++++Fevv++Prast+eF+vk++ v++a+++++s+GmRfkm fetedss++++ +Gt+++++ +dp+rWp+S+Wr+L+ XP_024986751.1 290 AVKQATNGQPFEVVFYPRASTPEFCVKASLVKNAMQIRWSPGMRFKMPFETEDSSRISWfMGTISSIQVADPIRWPDSPWRLLQ 373 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MITFMDSKEK LKETERCLDS QLWHACAGSM IQMPPVNSKV FYFPQGHAEH ATGNVEFRDR 60 NGQSRVPAWI PCRVAAVKFM ADLDTDEVYA KIRLIPVSGS GEFSCFDDED TGSQNGGSSD 120 GQVKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTILA KDVHGDTWKF 180 RHIYRGTPRR HLLTTGWSTF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK RGIGGGQETS 240 SGWNPAGGNC VIPYGGYSPL MRNGSGGGGG SGGGNTTGKV KVEADSVVQA VKQATNGQPF 300 EVVFYPRAST PEFCVKASLV KNAMQIRWSP GMRFKMPFET EDSSRISWFM GTISSIQVAD 360 PIRWPDSPWR LLQVTWDEPD LLQNVKHVNP WLVELVSTMP AIHMSPFSPP RKKCRPSQHP 420 DYPMDTQIPI PIPGLCGPHS HLFGGPTTGP FGYHIPENLN PHHPASMQGA RHTRYGLSLS 480 DIQLNNKLNS GFSPTTTKPS HIHPFLNKPA ISEPVSCLLT IGNSTTASKE AETPKTSQFL 540 LFGQPILTEQ QISERGHVSG SGSGSGSGSG SGQNHHRESE LNLETGHCKV FMESEDVGRT 600 LDLSLLNSYE ELCKKLAIMF KIESSTMVNR VHYWDVTGSL KHIGDEPYGE FAKTARRLTI 660 VTDPSSSENN VNGS

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MITFMDSKEK LKETERCLDS QLWHACAGSM IQMPPVNSKV FYFPQGHAEH ATGNVEFRDR  60
NGQSRVPAWI PCRVAAVKFM ADLDTDEVYA KIRLIPVSGS GEFSCFDDED TGSQNGGSSD  120
GQVKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTILA KDVHGDTWKF  180
RHIYRGTPRR HLLTTGWSTF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK RGIGGGQETS  240
SGWNPAGGNC VIPYGGYSPL MRNGSGGGGG SGGGNTTGKV KVEADSVVQA VKQATNGQPF  300
EVVFYPRAST PEFCVKASLV KNAMQIRWSP GMRFKMPFET EDSSRISWFM GTISSIQVAD  360
PIRWPDSPWR LLQVTWDEPD LLQNVKHVNP WLVELVSTMP AIHMSPFSPP RKKCRPSQHP  420
DYPMDTQIPI PIPGLCGPHS HLFGGPTTGP FGYHIPENLN PHHPASMQGA RHTRYGLSLS  480
DIQLNNKLNS GFSPTTTKPS HIHPFLNKPA ISEPVSCLLT IGNSTTASKE AETPKTSQFL  540
LFGQPILTEQ QISERGHVSG SGSGSGSGSG SGQNHHRESE LNLETGHCKV FMESEDVGRT  600
LDLSLLNSYE ELCKKLAIMF KIESSTMVNR VHYWDVTGSL KHIGDEPYGE FAKTARRLTI  660
VTDPSSSENN VNGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein