PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986638.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 381aa MW: 40376.4 Da PI: 7.1972

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.7e-08	95	119	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_024986638.1 95 FKTKLCCKFRA-GTCPYITNCNFAHS 119 69*******.***********8 PP
2	zf-CCCH	18.5	3.7e-06	169	194	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_024986638.1 169 YKGRHCKKFYTEEGCPYGDNCTFLHD 194 77888********************7 PP
3	zf-CCCH	44.3	2.9e-14	261	286	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +tG+C++G++C+FaHg XP_024986638.1 261 WKTRICNKWEQTGYCPFGSKCHFAHG 286 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MDYGRETGNV VQIITGGGSR NGADYWGDQP VWATEDEYGV WDREASVDTT SNSNYDGRQS 60 QTRSGSEPPN KKTRNGQGGD VQASSRSKAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHSI 120 EELRRPPPNW QEIVAAHEEE RAVSSEPREE FQIPSLGSSS FTVDSQRSYK GRHCKKFYTE 180 EGCPYGDNCT FLHDEQSKAR ESVVISLGPG SGGGYGGVGA SGGGGGGAGG GGGGGGGGVG 240 GSGGGVAEAA GSNSILKPSN WKTRICNKWE QTGYCPFGSK CHFAHGAAEL HRYGGGLVDI 300 DAKDSPTAMD SNKQGVMSSK IPIETVVAAG PSAAHSDGYH VGAPSQRLPG VIPRTGQRPF 360 QKWKGPDKIS RIYGDWIDEI E

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MDYGRETGNV VQIITGGGSR NGADYWGDQP VWATEDEYGV WDREASVDTT SNSNYDGRQS  60
QTRSGSEPPN KKTRNGQGGD VQASSRSKAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHSI  120
EELRRPPPNW QEIVAAHEEE RAVSSEPREE FQIPSLGSSS FTVDSQRSYK GRHCKKFYTE  180
EGCPYGDNCT FLHDEQSKAR ESVVISLGPG SGGGYGGVGA SGGGGGGAGG GGGGGGGGVG  240
GSGGGVAEAA GSNSILKPSN WKTRICNKWE QTGYCPFGSK CHFAHGAAEL HRYGGGLVDI  300
DAKDSPTAMD SNKQGVMSSK IPIETVVAAG PSAAHSDGYH VGAPSQRLPG VIPRTGQRPF  360
QKWKGPDKIS RIYGDWIDEI E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-120	C3H family protein