PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986430.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

E2F/DP

Protein Properties

Length: 468aa MW: 51618.7 Da PI: 4.6923

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.3	2.3e-27	155	220	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg XP_024986430.1 155 RYDSSLGLLTKKFINLIKHAEDGILDLNNAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 220 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MSEARAPNRQ AAPPPSHASV AGGGGGQILH PMRRHLPFSS TRPPFIPSDD YHRFSSGNDG 60 NRVATTVDQE AELIIVKSPP VKRKLGTDYN EVPSNEWASP GYTGTVNSPV RTPVSGKGGR 120 MNGRSRVTKS SKPAPQTPIS NTGSPSPLTP VGNCRYDSSL GLLTKKFINL IKHAEDGILD 180 LNNAADTLEV QKRRIYDITN VLEGIGLIEK KLKNRIRWKG LDASKPGELE DDVTLLQAEV 240 QKLSMEEHRL DESIREMQER MRDLSEDNTN QKWLFVTEDD IKSLPCFQNE TLIAIKAPHG 300 TTLEVPDPDE AVDYPQRRYR IILRSTMGPI DVYLVSQFEE KFEDIDGVEQ PMTVPVASSS 360 GSDDNPATEV TIEAQPQHVH GMSSDINMPE DSPGRIMRIV PSDVDNDADY WLLSDREVPL 420 TDIWNTELPG IQWDGVDLLS EEFGLAEVGT PRATTPPSDA SLNANARS

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MSEARAPNRQ AAPPPSHASV AGGGGGQILH PMRRHLPFSS TRPPFIPSDD YHRFSSGNDG  60
NRVATTVDQE AELIIVKSPP VKRKLGTDYN EVPSNEWASP GYTGTVNSPV RTPVSGKGGR  120
MNGRSRVTKS SKPAPQTPIS NTGSPSPLTP VGNCRYDSSL GLLTKKFINL IKHAEDGILD  180
LNNAADTLEV QKRRIYDITN VLEGIGLIEK KLKNRIRWKG LDASKPGELE DDVTLLQAEV  240
QKLSMEEHRL DESIREMQER MRDLSEDNTN QKWLFVTEDD IKSLPCFQNE TLIAIKAPHG  300
TTLEVPDPDE AVDYPQRRYR IILRSTMGPI DVYLVSQFEE KFEDIDGVEQ PMTVPVASSS  360
GSDDNPATEV TIEAQPQHVH GMSSDINMPE DSPGRIMRIV PSDVDNDADY WLLSDREVPL  420
TDIWNTELPG IQWDGVDLLS EEFGLAEVGT PRATTPPSDA SLNANARS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-169	E2F/DP family protein