PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986193.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 347aa MW: 38568.7 Da PI: 8.4438

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.4	2.5e-23	83	127	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs++++ +k+CErH+hrgr+rsrk++e+ XP_024986193.1 83 DPEPGRCRRTDGKKWRCSKDAYHESKYCERHMHRGRNRSRKPVES 127 79****************************************986 PP
2	QLQ	64.6	2.5e-22	21	56	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+l+yKyL+a++PvP++L+++i++ XP_024986193.1 21 PFTAVQWQELEHQALIYKYLVAGVPVPSDLVMPIRR 56 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MSGSKSVAVS GGGGGDGYRA PFTAVQWQEL EHQALIYKYL VAGVPVPSDL VMPIRRSFEA 60 LSARLFHHPT SVGYCSYYGK KFDPEPGRCR RTDGKKWRCS KDAYHESKYC ERHMHRGRNR 120 SRKPVESQST SQSLSTAMSN IGTVNSTGSV KRSFQNVSNA SSPSQSLYPI TNSESFDFGS 180 NASETQVDTS SYVINNKDLR YAQGLTVNLD DHNYTSGVPE NARGLGMDIN IDGSRRLMPS 240 QLSTNSLLKP QNDSYLQSNS LQLNMTNTFD PLVDTTSMSK QRQQHPFFGS EIGSPGGQVK 300 HEQSMRQFFD EWPKAKEPWS NLDATTQLSM SMDPEFNARN PCPPNDA

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MSGSKSVAVS GGGGGDGYRA PFTAVQWQEL EHQALIYKYL VAGVPVPSDL VMPIRRSFEA  60
LSARLFHHPT SVGYCSYYGK KFDPEPGRCR RTDGKKWRCS KDAYHESKYC ERHMHRGRNR  120
SRKPVESQST SQSLSTAMSN IGTVNSTGSV KRSFQNVSNA SSPSQSLYPI TNSESFDFGS  180
NASETQVDTS SYVINNKDLR YAQGLTVNLD DHNYTSGVPE NARGLGMDIN IDGSRRLMPS  240
QLSTNSLLKP QNDSYLQSNS LQLNMTNTFD PLVDTTSMSK QRQQHPFFGS EIGSPGGQVK  300
HEQSMRQFFD EWPKAKEPWS NLDATTQLSM SMDPEFNARN PCPPNDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-45	GRF family protein