PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985431.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 418aa MW: 45475.6 Da PI: 9.3298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	183	205	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F+ ++L++H+ + H XP_024985431.1 183 VCSECGEVFPKMESLEHHQAVrH 205 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MAVLKLPPSE TQKVQPTKRR RKHHPQNPKL KQQHSSSSTS SSWDQIKNLL KCKQMDVGGS 60 DQKVQDPVRN PNGYSKLSSC GSICNFRDVA NGNTRVVHRA DNSPESSTVG QDSGLLRRKK 120 HVSNNGASSS SSRSLTGSVR SNTHGSYTSS SRGIQLRKLS GCYECHAIVD PARHVIPRST 180 ICVCSECGEV FPKMESLEHH QAVRHAVSEL GLEDSGRNIV EIIFKSSWLN KDHPIFTIER 240 ILKVNNTRRT IQRFEDCRDT VKIRANVTAT ASRCAADGNE LLRFHCTTLG CSLGSHGSSS 300 LCGSVPGCGV CTIIRHGFQN PKSCEGGGRK GVCTTASSGR AHDCLGVGAR GVKAMLVCRV 360 IAGKVKRVAE KTEAEEEGGP YDSMAGHPGL YSNLEELYVC NPRAILPCFV VIYKTMES

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MAVLKLPPSE TQKVQPTKRR RKHHPQNPKL KQQHSSSSTS SSWDQIKNLL KCKQMDVGGS  60
DQKVQDPVRN PNGYSKLSSC GSICNFRDVA NGNTRVVHRA DNSPESSTVG QDSGLLRRKK  120
HVSNNGASSS SSRSLTGSVR SNTHGSYTSS SRGIQLRKLS GCYECHAIVD PARHVIPRST  180
ICVCSECGEV FPKMESLEHH QAVRHAVSEL GLEDSGRNIV EIIFKSSWLN KDHPIFTIER  240
ILKVNNTRRT IQRFEDCRDT VKIRANVTAT ASRCAADGNE LLRFHCTTLG CSLGSHGSSS  300
LCGSVPGCGV CTIIRHGFQN PKSCEGGGRK GVCTTASSGR AHDCLGVGAR GVKAMLVCRV  360
IAGKVKRVAE KTEAEEEGGP YDSMAGHPGL YSNLEELYVC NPRAILPCFV VIYKTMES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-129	C2H2 family protein