PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024984872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | FAR1 | ||||||||
Protein Properties | Length: 862aa MW: 98115.8 Da PI: 5.8339 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.7 | 7.1e-17 | 173 | 258 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA GF++ +++ +ks+ +g+i+ +t+ Cs++gk+ ++k + ++++ +t+Cka+++++ ++dgk +++ + +eHnHel+ XP_024984872.1 173 EFYGKYAAGKGFDIITRS-TKSDVEGKIKYYTLACSRSGKAVCTRKC---HLLSKSVVKTNCKARINIRTSRDGKLYLSGFTSEHNHELS 258 6************98775.66679999***************99888...889999********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 862 aa Download sequence |
MNKMYQSTTW LHYSGTNCDD ETWFPNASVH LFWKLFPPKT TCITLTLALL NGWWSPRTFS 60 MINLENPWEI LDGFIKVRRS PWINQSALPL IQHNLPSEMV NINEFPSDGT MNSNGSDRSN 120 FRTPIIRNVK EEPLMEMENE DRVLYSGNTL AGDGEAEIPV IGMTFNSFEE VREFYGKYAA 180 GKGFDIITRS TKSDVEGKIK YYTLACSRSG KAVCTRKCHL LSKSVVKTNC KARINIRTSR 240 DGKLYLSGFT SEHNHELSHG NSSCNTCTTS LGPHLERLVE YDDQVETQVN NNFQLLASNE 300 NLHSRNEEII NYIARSGSLR LGEGDIESIF DYFVHMQKQD TNFFYVSNMN EECCLRNVFW 360 ADGRSQALYE SFGDVVAFES TYLNSDYKLP LVSIVGVNHH GQLILLGCGI LFDDDKESYM 420 WLFRSWLKCV CGRPPKAIVT NQCPSVQAAV SEVFPETRNR LCLQDIMRTI SLELCGLTNY 480 LAIKNALESS VLESCTIEEF EESWNLFIKE LKLENNDRLR TLYLDRAKWV PAFLKTTFWA 540 GLSSANEQNE NVNGFFDGHI LPETTLKQFM DQFNAMLRSK IEKEEHADSI SSSFVIPTIT 600 DFPLEKQFQD AYTNEMFKLF QEELIGLIYC NASLVSSEGP KLTFEVKDHA RMKDGSRRKV 660 VYEVIFDDAS CNVWCKCCLF ESQGILCRHA VAVLVDQDVN EVPSCYILSR WRKDVNRMHK 720 GVSSCNEVLK SNEQMVCLGK LRTACHSIVE IGAETEEGFE LALNLLDEVK ERMFEHKSES 780 SRNNEEPSGS SAKDGEAAKH YGEELQRSLV VRRRGRPPTK KKKVHFSPDT WTNNPSARNN 840 SNGQNLRGNA DTLTFNASFG GS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-107 | FAR1 family protein |