PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984501.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 504aa    MW: 56844.6 Da    PI: 4.8537
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.55.4e-901455032374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++ L++ Ae++++++++laq +L+rl+++ +sp+g+++qR+a+yf+eA++  l++       + + ++ ++++ +++++a+k+fs+vsPi+ fs 
  XP_024984501.1 145 RDELIRLAECFETQSFQLAQMILSRLNQRlRSPNGKALQRAAFYFKEAIQCLLTG------PTRRFQTCTSYEIVQVIKAYKMFSNVSPIPMFSS 233
                     678*************************99*************************......556677777788********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqaIl+av+g+  vH+iDfdi+ G+QW+++l+a+a+++e     +p +RiT+v+++e   + e + ++e+L++f   l+++fe++++  +++
  XP_024984501.1 234 FTANQAILDAVDGAMIVHVIDFDIGLGGQWASFLKAIAEKAEArritSPVVRITAVVPEE--YESESRLIRENLHQFSCDLKLRFEIDFISIRAF 326
                     **************************************9995444459**********66..8999999************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnsesFlerflealeyysalfdsl.eaklpres 279
                     e l+++++++ +gE++aV l+  ++r            + +++ ++++ P++vv v+ e + ++++ F + +++ le ys+++ sl +a+++  +
  XP_024984501.1 327 EILSFKAIKFMSGEKTAVLLSPTIFRRI---------GPGFINDLRQVLPHMVVYVDGElIGCGTSFFRQTVIDGLELYSTILASLeAANVGGGA 412
                     **********************999998.........468*******************5566***********************888999888 PP

            GRAS 280 ...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        ++ +++E ++l ++i  +v  +g++       +  Wre+l++aG++pv ls++a  qa++llr+v+++gy+v ++++++vl+W++rpLv++S
  XP_024984501.1 413 gggDWIRNIEMFVLLPKIIAAVEDAGRH-------ATPWREALGRAGMRPVGLSQFADFQAECLLRRVQVRGYHVVKQQAEMVLCWHGRPLVATS 500
                     8889999***************999998.......789********************************************************* PP

            GRAS 372 aWr 374
                     aW+
  XP_024984501.1 501 AWT 503
                     **6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MKLPFISSQN NLYSVDNVGS NRYEPKSVLD VRRSPPSPIT GNSSEFNSID YNYNSAVLLS  60
SGEQLPVENF EHEMINQFEE WDSDSLIREL GLYDDSTKSA YPLDLPELPP FFHSDFESLN  120
PNTNQNPFDF MSHDDDDDGN EFDFRDELIR LAECFETQSF QLAQMILSRL NQRLRSPNGK  180
ALQRAAFYFK EAIQCLLTGP TRRFQTCTSY EIVQVIKAYK MFSNVSPIPM FSSFTANQAI  240
LDAVDGAMIV HVIDFDIGLG GQWASFLKAI AEKAEARRIT SPVVRITAVV PEEYESESRL  300
IRENLHQFSC DLKLRFEIDF ISIRAFEILS FKAIKFMSGE KTAVLLSPTI FRRIGPGFIN  360
DLRQVLPHMV VYVDGELIGC GTSFFRQTVI DGLELYSTIL ASLEAANVGG GAGGGDWIRN  420
IEMFVLLPKI IAAVEDAGRH ATPWREALGR AGMRPVGLSQ FADFQAECLL RRVQVRGYHV  480
VKQQAEMVLC WHGRPLVATS AWTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-129GRAS family protein