PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983519.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

E2F/DP

Protein Properties

Length: 343aa MW: 37261.6 Da PI: 8.2181

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.5	2e-27	105	186	3	71
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg XP_024983519.1 105 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgeggqtpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 186 689*****...*999***************************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MVTAGSNNQD DVGEKNPSSV VSKAGGGATR SCGTTGSGQS VSTSGSVGSL STRSELPMVG 60 TPVSESTFLR LNHLDIHTDN AGSQGAAGNK KKKRGQRATG GDKGGRGLRQ FSMKVCEKVE 120 SKGRTTYNEV ADELVAEFAD PGEGGQTPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK 180 EIQWKGLPRT SLNDIEEIKR DRLAIRSRIE KKAAYLKELQ DQYVGLQNLI QRNEQLYSSG 240 NAPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNYV LKAMNLSKRD 300 DVANNVSADG GEGSSISSMF RPPLPSGKPS VPGILKTRVK HEH

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MVTAGSNNQD DVGEKNPSSV VSKAGGGATR SCGTTGSGQS VSTSGSVGSL STRSELPMVG  60
TPVSESTFLR LNHLDIHTDN AGSQGAAGNK KKKRGQRATG GDKGGRGLRQ FSMKVCEKVE  120
SKGRTTYNEV ADELVAEFAD PGEGGQTPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK  180
EIQWKGLPRT SLNDIEEIKR DRLAIRSRIE KKAAYLKELQ DQYVGLQNLI QRNEQLYSSG  240
NAPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNYV LKAMNLSKRD  300
DVANNVSADG GEGSSISSMF RPPLPSGKPS VPGILKTRVK HEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-145	E2F/DP family protein