PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981646.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 567aa MW: 62977.9 Da PI: 6.5485

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.3e-08	205	225	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg XP_024981646.1 205 PCPEFRK-GSCRHGDACEYAHG 225 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MCTSDLVVGL SNGQKLSNIS ILLELSAADD LEGFRATALH MAVSGGSSSS IEVVKLLIDA 60 SADTSCLDVN GNRPIDLIPL VFGSSFNSKR KFLELMLNGY AHGEELCLLN VLTDDHIHIH 120 GDERKDVPNL ISSREGTEKK EYPVDLSLPD MKNGIYNTDE FRMYTFKIKP CSRAYSHDWT 180 ECPFVHPGEN ARRRDPQKYH YSCVPCPEFR KGSCRHGDAC EYAHGIFECW LHPAQYRTRL 240 CKDEVGCSRK VCFFAHKTEE LRPLHPSTGS AVLSPRPMSL KLSDMSSISP FSLGSPSIMI 300 PPSSTPPITP GASSPGGGPL WLNQPSPTLK VLGSRFKTTP NSQDLDFEAE MIRVDRYRQQ 360 QLMDEFAGLS PPSSWNNNGF LGDRSEDYNI STGSNHKSLE LLSSADHTIL SQLQGVSLES 420 RIAQLHQNMN YSGLPSSPLR MSSPSSLRPN QIMHSRSAAF AKRSQSFIDR GTVNRQSGFP 480 SPVLSSMAPS MHSDWGSPDG KLNWGIQKDE LNKLRKSASF GVRRSPDSLL IPNNQEPDSH 540 VNNVTFDEEQ FPPWVEQLYM EQEQLVA

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MCTSDLVVGL SNGQKLSNIS ILLELSAADD LEGFRATALH MAVSGGSSSS IEVVKLLIDA  60
SADTSCLDVN GNRPIDLIPL VFGSSFNSKR KFLELMLNGY AHGEELCLLN VLTDDHIHIH  120
GDERKDVPNL ISSREGTEKK EYPVDLSLPD MKNGIYNTDE FRMYTFKIKP CSRAYSHDWT  180
ECPFVHPGEN ARRRDPQKYH YSCVPCPEFR KGSCRHGDAC EYAHGIFECW LHPAQYRTRL  240
CKDEVGCSRK VCFFAHKTEE LRPLHPSTGS AVLSPRPMSL KLSDMSSISP FSLGSPSIMI  300
PPSSTPPITP GASSPGGGPL WLNQPSPTLK VLGSRFKTTP NSQDLDFEAE MIRVDRYRQQ  360
QLMDEFAGLS PPSSWNNNGF LGDRSEDYNI STGSNHKSLE LLSSADHTIL SQLQGVSLES  420
RIAQLHQNMN YSGLPSSPLR MSSPSSLRPN QIMHSRSAAF AKRSQSFIDR GTVNRQSGFP  480
SPVLSSMAPS MHSDWGSPDG KLNWGIQKDE LNKLRKSASF GVRRSPDSLL IPNNQEPDSH  540
VNNVTFDEEQ FPPWVEQLYM EQEQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-133	C3H family protein