PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980214.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 350aa MW: 39962.2 Da PI: 8.6607

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.7	5.4e-25	93	136	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_024980214.1 93 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 136 79***************************************998 PP
2	QLQ	59.5	9.3e-21	25	59	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+++++P+Pp+Ll+ i+ XP_024980214.1 25 PFTATQWQELEHQALVYKYMISGMPIPPDLLFTIK 59 9******************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MMSTAAEGGG TVRNNGGGGG GGRYPFTATQ WQELEHQALV YKYMISGMPI PPDLLFTIKR 60 SLDSSTKLIL HHQPPHPSIG WNCFQMGFGR KIDPEPGRCR RTDGKKWRCS KEAYPDSKYC 120 ERHMHRGRNR SRKPVEVNMS TTPKTPPTAI PMIPSSICTK SPNYPSPNSH PFSSTDHFYN 180 TPHLSSFSRP SSGSGGIQDH FLLESSPYSH SDKDYRKSFG MKEEIDEHRF FSESSGTIKT 240 LSGSSMADSW QLEPLAMNNL THSKQTSFSD QYHHHQNGYS YQQQQQQQQD QSYYDQFSLK 300 FERKDEPQKV MHHFFDEWPP NDNNKDSSTT RLSISIPNSA HNFFLTHNDK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MMSTAAEGGG TVRNNGGGGG GGRYPFTATQ WQELEHQALV YKYMISGMPI PPDLLFTIKR  60
SLDSSTKLIL HHQPPHPSIG WNCFQMGFGR KIDPEPGRCR RTDGKKWRCS KEAYPDSKYC  120
ERHMHRGRNR SRKPVEVNMS TTPKTPPTAI PMIPSSICTK SPNYPSPNSH PFSSTDHFYN  180
TPHLSSFSRP SSGSGGIQDH FLLESSPYSH SDKDYRKSFG MKEEIDEHRF FSESSGTIKT  240
LSGSSMADSW QLEPLAMNNL THSKQTSFSD QYHHHQNGYS YQQQQQQQQD QSYYDQFSLK  300
FERKDEPQKV MHHFFDEWPP NDNNKDSSTT RLSISIPNSA HNFFLTHNDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-60	GRF family protein