PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980203.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 515aa MW: 55779.4 Da PI: 7.3909

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110	3.5e-34	123	230	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ XP_024980203.1 123 APKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphq 217 5699****************************************************************999888888888885555555555566 PP TCP 89 ............k 89 + XP_024980203.1 218 fhgalalahhpfE 230 6556555544441 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MERTDLQSNN KQSSTAPTSN TPQPHHHHHH HHHLHHQPMV VPFDGRSVAP FMGSISIQPT 60 PTTTSGGSSS LSSPSNQHPP SASTSSATQL SPPHPHHVDA SLAIATRSQD LAKETPQPVA 120 AVAPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII 180 AATGTGTIPA NFSTLNVSLR SSGSTLSAPP SKSAPHQFHG ALALAHHPFE EGFSQMLGFH 240 QHQHHQNPHI LTADQIAEAI STGGNGDSTE NYMRKRYRED LFKDESNNQN QGEVTVGSTS 300 PSNKQFKGSM EMPKQQEAGP SSGNNILRHH ANMMPATAMW AVAPAPTSAT GNTLWMLPVS 360 TTGLTVSSSS SQHSHLPAAA SESQQHHHHH HQQMWPFPTA QAVGGGNTLQ APLHFIPRIN 420 IPTTNLEFQQ GARGNPLQLG SMLMQQQPSQ HLGLGMSESN LGMLAALNAY SRGGLNMNSD 480 QNHPLDHHHH QQPQQQQQHH SQTTDSGDED QNDST

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MERTDLQSNN KQSSTAPTSN TPQPHHHHHH HHHLHHQPMV VPFDGRSVAP FMGSISIQPT  60
PTTTSGGSSS LSSPSNQHPP SASTSSATQL SPPHPHHVDA SLAIATRSQD LAKETPQPVA  120
AVAPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII  180
AATGTGTIPA NFSTLNVSLR SSGSTLSAPP SKSAPHQFHG ALALAHHPFE EGFSQMLGFH  240
QHQHHQNPHI LTADQIAEAI STGGNGDSTE NYMRKRYRED LFKDESNNQN QGEVTVGSTS  300
PSNKQFKGSM EMPKQQEAGP SSGNNILRHH ANMMPATAMW AVAPAPTSAT GNTLWMLPVS  360
TTGLTVSSSS SQHSHLPAAA SESQQHHHHH HQQMWPFPTA QAVGGGNTLQ APLHFIPRIN  420
IPTTNLEFQQ GARGNPLQLG SMLMQQQPSQ HLGLGMSESN LGMLAALNAY SRGGLNMNSD  480
QNHPLDHHHH QQPQQQQQHH SQTTDSGDED QNDST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	9e-87	TCP family protein