PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979342.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92235.6 Da    PI: 6.3911
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_024979342.1 18 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    5679*****************************************************97 PP
2START169.91.7e-531563642205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W + ++ +++l+v+ ++  g+++l 
  XP_024979342.1 156 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPTWFRECRTVDVLDVLPTAngGTIELL 249
                     789*******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+  Rdf+ +Ry+   ++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_024979342.1 250 YMQLYAPTTLATaRDFWLLRYTSVTEDGSLVVCERSLSNTQNGPSippVPNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 344
                     ********************************************99999********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++ +l+++++
  XP_024979342.1 345 ESSTVLAQKTTMMALRQLRQ 364
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MMALSCKDGK GAILDNGKYV RYTPEQVEAL ERLYHECPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQSVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGCFRQ  120
HTQNDTSCES VVTSGQHHLT PQHPPRDASP AGLLSIAEET LTEFLSKATG TAVEWVQMPG  180
MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK DRPTWFRECR TVDVLDVLPT  240
ANGGTIELLY MQLYAPTTLA TARDFWLLRY TSVTEDGSLV VCERSLSNTQ NGPSIPPVPN  300
FVRAEMLPSG YLIRPCEGGG SIIHIVDHMN LEAWSVPEVL RPLYESSTVL AQKTTMMALR  360
QLRQIAQEVS QSSTPNWGRR PAALRALSQR LSRGFNEAVN GFTDEGWSLM GTDGMDDVTI  420
LVNSSPEKLM GLNLSFSNGY PSVNTSVMCA KASMLLQNVP PALLLRFLRE HRSEWADNNV  480
DAYSAAAIKL GPCSLPGSRA GNFGGQIILP LAHTIEHEEL LEVIKLEGVS HCPEDALMAR  540
DMFLLQLCSG MDENAVGMCS ELVFAPIDAS FADDAPLLPS GFRIIPLDFC KVRSSLNEAS  600
SPSRTLDLAS ALEVRGPGNK TSGDRSVSSG NARSVMTIAF EFAFESHMQE SVAAMARQYV  660
HSIISSVQRV ASALSPSHLN PNGGIQAPLG TPEAHTLARW ISHSYRCYLG VELLKVPGEG  720
SESILKSLWH QSDAILCCSL KALPVFTFSN QAGLDMLETT LVALQDIGLE KILDEHGRKS  780
LCSEFPQIMQ QGFACLQGGI CVSSMGRPVS YERAVAWKVL NEEDNAHCIC FMFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein