PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977792.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 1391aa MW: 154754 Da PI: 6.6661

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.5e-06	1366	1389	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G Ck G++C++ H+ XP_024977792.1 1366 GQRVCK-FYESGRCKKGASCNYWHP 1389 6799.8899*********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1391 aa Download sequence
MEPRNSAAES QTSDNQSQPI QELDGDGGSK MDGAPVAVDV VVAADADGGG VEAEVELGSG 60 VGGAEMVKKK RGRPPRVQAK SPPAKMNKEE DEDVCFICFD GGSLVLCDRR GCPKAYHPAC 120 VKRDEAFFRS KAKWNCGWHI CSRCQKAAHH MCYTCTYSLC KGCIKKADYV CVRDKGFCTV 180 CMKTIMLIEN DGQGKDEKAQ VDFDDKTSWE YLFKVYWVYL KGKLSLTLDE LTQAKSPSTG 240 ASTSSVTPST CVHNGDNNLK SNMLDIPLRN LEASESKRRK TDEQIITPHK ETVSMRKLGT 300 DESSSVVACK DWATKELLDF VAHMKNGEAS VLSQFDVQEL MLEYIKRNNL RDPRKKSQII 360 CDSRLKTLFG KPRVGHFEML KLLEYHFFIK EDLPKNTINS IARQVDPDWN SDNMLTLGKD 420 KKRKNNRKGE ERPPQNKLDE YAAIDVHNMN LIYLRRKLME NLIEDSEAFH GKVVGSIVRI 480 RISGSDQKHD MYRLVQVVGI SKADAPYKIG DKSADDVLEV LNLDKKETVL IDTISNQDLS 540 EDECRRLRQS IKCGLVKRFT VGEIQEKAVS LQSVRLNDWM EAEILRLNNL RDRASEKGHK 600 KGLREYVEKL QLLKTPEERE RRLREIPEVH SDPKMNPDYE TDDTEEYFNK EHEHKKPKYS 660 GVSRKNTNSL KKRAEFSNNI GRSWKNEQPE SKATGRLNMA KDGHGSGSLV RPKNPVECNG 720 STINNRNHRT IGSSPLVNPA SETATSYSMR NTTTSNDSDM DKVWHYRDPS GKVQGPFCMI 780 QLQKWSTTGY FPVDMRIWMN REDESLLLSD VLKEQSQNSR LSENKTATDK VGNRIEGLTV 840 RTANLLSTEK LPDDHGSSGQ SSVQNWSSNG NILNRNVSNE STGQLNTLEL ASPTPVENDA 900 DIKRVSSIFD ISDASLVDLP SPTPKKTSSH EEEKVQNGGA KEQPILPEIL VQDARNFTSD 960 QDVGGAQLLK TANEWSGYSP IQVKREEWNS GGVSVSVSAP QAEGDHVATT TSNIEQIVHL 1020 PPWNGVRETI EFSTLAEESV SDLLAEVDAM ESQNGFPSPT SRRNGFVEDL FNGSFEEFSP 1080 TPDQSARSDG FSSIQADIQL PYQTAATTTT TTTAATDEHS EVTSQGNNGN VFDFVKSSPT 1140 LQPSFICPET KSENPPFKWP EMLPEAVSKD IRVGCHSSEL QPPLHDVNNS AKDQERESGQ 1200 PTTTKPNPSP ELVPQLSQRT ESEDRTDHIR SGGRMMVGGR KAGDGGGTEN EQDGSFIHLL 1260 PPPPPPSLAI GFDKVYPRRV GSEATLGNMN IFIRPSQETV TRGSNPHLNV GRGGNIGWDP 1320 HQRMYGGERH NNNSPRERSY TGRQPSFGGG SGGGGGYLRP PPPPKGQRVC KFYESGRCKK 1380 GASCNYWHPL P

Sequence ? help Back to Top

Protein Sequence Length: 1391 aa Download sequence

MEPRNSAAES QTSDNQSQPI QELDGDGGSK MDGAPVAVDV VVAADADGGG VEAEVELGSG  60
VGGAEMVKKK RGRPPRVQAK SPPAKMNKEE DEDVCFICFD GGSLVLCDRR GCPKAYHPAC  120
VKRDEAFFRS KAKWNCGWHI CSRCQKAAHH MCYTCTYSLC KGCIKKADYV CVRDKGFCTV  180
CMKTIMLIEN DGQGKDEKAQ VDFDDKTSWE YLFKVYWVYL KGKLSLTLDE LTQAKSPSTG  240
ASTSSVTPST CVHNGDNNLK SNMLDIPLRN LEASESKRRK TDEQIITPHK ETVSMRKLGT  300
DESSSVVACK DWATKELLDF VAHMKNGEAS VLSQFDVQEL MLEYIKRNNL RDPRKKSQII  360
CDSRLKTLFG KPRVGHFEML KLLEYHFFIK EDLPKNTINS IARQVDPDWN SDNMLTLGKD  420
KKRKNNRKGE ERPPQNKLDE YAAIDVHNMN LIYLRRKLME NLIEDSEAFH GKVVGSIVRI  480
RISGSDQKHD MYRLVQVVGI SKADAPYKIG DKSADDVLEV LNLDKKETVL IDTISNQDLS  540
EDECRRLRQS IKCGLVKRFT VGEIQEKAVS LQSVRLNDWM EAEILRLNNL RDRASEKGHK  600
KGLREYVEKL QLLKTPEERE RRLREIPEVH SDPKMNPDYE TDDTEEYFNK EHEHKKPKYS  660
GVSRKNTNSL KKRAEFSNNI GRSWKNEQPE SKATGRLNMA KDGHGSGSLV RPKNPVECNG  720
STINNRNHRT IGSSPLVNPA SETATSYSMR NTTTSNDSDM DKVWHYRDPS GKVQGPFCMI  780
QLQKWSTTGY FPVDMRIWMN REDESLLLSD VLKEQSQNSR LSENKTATDK VGNRIEGLTV  840
RTANLLSTEK LPDDHGSSGQ SSVQNWSSNG NILNRNVSNE STGQLNTLEL ASPTPVENDA  900
DIKRVSSIFD ISDASLVDLP SPTPKKTSSH EEEKVQNGGA KEQPILPEIL VQDARNFTSD  960
QDVGGAQLLK TANEWSGYSP IQVKREEWNS GGVSVSVSAP QAEGDHVATT TSNIEQIVHL  1020
PPWNGVRETI EFSTLAEESV SDLLAEVDAM ESQNGFPSPT SRRNGFVEDL FNGSFEEFSP  1080
TPDQSARSDG FSSIQADIQL PYQTAATTTT TTTAATDEHS EVTSQGNNGN VFDFVKSSPT  1140
LQPSFICPET KSENPPFKWP EMLPEAVSKD IRVGCHSSEL QPPLHDVNNS AKDQERESGQ  1200
PTTTKPNPSP ELVPQLSQRT ESEDRTDHIR SGGRMMVGGR KAGDGGGTEN EQDGSFIHLL  1260
PPPPPPSLAI GFDKVYPRRV GSEATLGNMN IFIRPSQETV TRGSNPHLNV GRGGNIGWDP  1320
HQRMYGGERH NNNSPRERSY TGRQPSFGGG SGGGGGYLRP PPPPKGQRVC KFYESGRCKK  1380
GASCNYWHPL P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein