PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976929.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 759aa MW: 84947.6 Da PI: 6.9234

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.1	7e-23	122	223	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ XP_024976929.1 122 FCKTLTASDTSTHGGFSVLRRHADEClpqldmS-RQPPTQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 213 99**************************963.3334459********************************************..3488 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+v+v+r+ XP_024976929.1 214 GDLRVGVRRA 223 889**996 PP
2	Auxin_resp	116.4	2.4e-38	248	330	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+++Y+Pr+s++eF+v+++++++++k+++s+GmRf m+fe+e+++e+r++Gt+vg+++ dp rWp+SkW++Lk XP_024976929.1 248 AWHAIKTGTMFTIYYKPRTSPTEFIVPYDQYMESIKNNYSIGMRFNMRFEGEEAPEQRFTGTIVGIEERDPKRWPESKWKCLK 330 89*******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence
MTSSEVSSKV DADLALYKDL WRACAGPLVT VPRDGELVFY FPQGHIEQVE ASTNQVAEQQ 60 MPMYNLPAKI LCRVVNVQLK AEPDTDEVFA QITLMPESNQ DENAVKKEPA PPPDSQFRVH 120 SFCKTLTASD TSTHGGFSVL RRHADECLPQ LDMSRQPPTQ ELVAKDLHGA EWRFRHIFRG 180 QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGDLRVGV RRAMRQQANI PSSVISSHSM 240 HLGVLATAWH AIKTGTMFTI YYKPRTSPTE FIVPYDQYME SIKNNYSIGM RFNMRFEGEE 300 APEQRFTGTI VGIEERDPKR WPESKWKCLK VRWDETSTIP RPDRVSPWKI EPALVPPAIN 360 PLPVHRQKRP RSSMLPSSPD SSVLTREGSS KIPATDPSPA SAFSRVLQGQ ELSTLRGTFV 420 DSNESDSCDR PIHWTPSVID DEKADAVNAS RRGRTGESSF ADLLSGFGSN NCSANEFSTP 480 SNEGKFNLHH SNPWPIMPSS LSLSLLGGGM KNGLQDVRYS AFDQYSVHPN QRGGRMPPPL 540 SSYLQMSSSH LSEVMPKSQS VKQNEIMRPK DGNCKIFGVP LAGNTNISDA AAAAAVGQVQ 600 SQRYLTFDCD QKFEQSKRLK VADHSAVGKE QHLQAKVQGV STRSCTKVHK QGIALGRSVD 660 LTKYNNYDEL IGELDELFEF NGELKRPGNR NWLVVYTDDE GDMMLVGDDP WPEFCGMVRK 720 MFIYTREEVQ RMNPGTLNDD NSSVAEGMDE KDTRKNENA

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence

MTSSEVSSKV DADLALYKDL WRACAGPLVT VPRDGELVFY FPQGHIEQVE ASTNQVAEQQ  60
MPMYNLPAKI LCRVVNVQLK AEPDTDEVFA QITLMPESNQ DENAVKKEPA PPPDSQFRVH  120
SFCKTLTASD TSTHGGFSVL RRHADECLPQ LDMSRQPPTQ ELVAKDLHGA EWRFRHIFRG  180
QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GENGDLRVGV RRAMRQQANI PSSVISSHSM  240
HLGVLATAWH AIKTGTMFTI YYKPRTSPTE FIVPYDQYME SIKNNYSIGM RFNMRFEGEE  300
APEQRFTGTI VGIEERDPKR WPESKWKCLK VRWDETSTIP RPDRVSPWKI EPALVPPAIN  360
PLPVHRQKRP RSSMLPSSPD SSVLTREGSS KIPATDPSPA SAFSRVLQGQ ELSTLRGTFV  420
DSNESDSCDR PIHWTPSVID DEKADAVNAS RRGRTGESSF ADLLSGFGSN NCSANEFSTP  480
SNEGKFNLHH SNPWPIMPSS LSLSLLGGGM KNGLQDVRYS AFDQYSVHPN QRGGRMPPPL  540
SSYLQMSSSH LSEVMPKSQS VKQNEIMRPK DGNCKIFGVP LAGNTNISDA AAAAAVGQVQ  600
SQRYLTFDCD QKFEQSKRLK VADHSAVGKE QHLQAKVQGV STRSCTKVHK QGIALGRSVD  660
LTKYNNYDEL IGELDELFEF NGELKRPGNR NWLVVYTDDE GDMMLVGDDP WPEFCGMVRK  720
MFIYTREEVQ RMNPGTLNDD NSSVAEGMDE KDTRKNENA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	0.0	ARF family protein