PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976560.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 590aa    MW: 66074.6 Da    PI: 6.0675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.4e-33276333260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkg+e+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+g Hnh+k
  XP_024976560.1 276 EDGYNWRKYGQKQVKGNEYPRSYYKCTQPNCPVKKKVERSQ-DGHITEIIYKGAHNHPK 333
                     7****************************************.***************85 PP
2WRKY103.51.1e-32460518159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+
  XP_024976560.1 460 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCTVRKHVERASHDLKSVITTYEGKHNHD 518
                     59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    
MDGFDEHTEI NGDWIPPSPS PRSRSFFSAI LGYDTGSRES PKDDDNNTTG FTFPGPDKQF  60
GYENGQPTKA SSRSGLVERM TTRAGYNAPS LNTDIIRPSA VESPYLTIPP GLSPTSLLDS  120
PVFLSNSPVQ PSPTTGKFPF APNDNGNSRR SMMFSDFPKD NLFEDLNTSS FAFKPVPASG  180
APIKVNPPFM SWQSLQSIEA SGQYENRFPI QSIETDKVHS QNGNSNLSDV KKAEVNNFTY  240
QSRPFGVNND KVEEHYDEDT NQLINGDNAN ANVTSEDGYN WRKYGQKQVK GNEYPRSYYK  300
CTQPNCPVKK KVERSQDGHI TEIIYKGAHN HPKPPFNRRS EIGSSSCVEG DPVWRNGDWG  360
HDGNLEVTSS TMSHHGPSGS RFESSDVMDI SLTFSSEEEE EEEDERATHG AVSLGNDGEG  420
DEYESKRRKI EGCVVDISVG NIAMREPRVV VQTMSEVDIL DDGYRWRKYG QKVVKGNPNP  480
RSYYKCTSTG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNNNNHQS QIQIQSMIEK  540
RHDVCGYGYR YGMEGKMPIH HHQYMLPKGE LVSDPPSPYH HQIMNSLAYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-133WRKY family protein