PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | FAR1 | ||||||||
Protein Properties | Length: 419aa MW: 48031.3 Da PI: 6.6437 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.7 | 4e-18 | 131 | 226 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+e+GF+vr s++k + +ng it+r +vCskeg++ ++ + +++ r+++++r +C a++k+ k ++ev+++ + HnH XP_024976220.1 131 KMYQKYANEAGFDVRLSNKKIN-KNGCITSRFYVCSKEGRPPSKYFDsldvlpGDRRIRNSNVKRSDCGACFKIYFVKeWRQYEVYRFIELHNHM 224 68**************987777.8899**************99998899**99899999***************9988789*************9 PP FAR1 89 la 90 l+ XP_024976220.1 225 LF 226 97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence |
MDYMPFNETS SKDIVEESSV FDSMNDCQGF DYGGENATAV NNETIEDQCN YSMRNEDGCN 60 DRNETVSEHN DGVFLDFVDI DVASLSNEAE DXXSDGMGET NDGSKCWFPN VDVEYKPKVG 120 DGFETVESAE KMYQKYANEA GFDVRLSNKK INKNGCITSR FYVCSKEGRP PSKYFDSLDV 180 LPGDRRIRNS NVKRSDCGAC FKIYFVKEWR QYEVYRFIEL HNHMLFNKEE MRFSRSKRQL 240 HYADHKTVFH GSSSKVGVTK SNRFRKAITG GVDCSGGTVR DHQNFKRDMS YFVGNKDAQM 300 LLNVMSNKRK ELLAIFWADE TARSNYKEFG DAISFDATFR TNKHAMIFVP FVAIDNHKKF 360 VVVGAALIHN ESVVDYTWVL KAFVKAHGRQ PRFVITDQCA SMKQAILIAF PESKHRLYQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-30 | FAR1 family protein |