PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975659.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family E2F/DP
Protein Properties Length: 375aa    MW: 42228.3 Da    PI: 9.5952
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.59.3e-231782171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rkeksL++l+++fl+l+++   + + l+++a++L    v  +rRRiYDi+N+Le+++++++k+kn+++wkg
  XP_024975659.1 17 RKEKSLGVLCSNFLRLYNRDGVESIGLDNAASQL---GV--ERRRIYDIVNILESVGVLTRKAKNQYTWKG 82
                    79*****************999************...**..****************************98 PP
2E2F_TDP74.21.4e-23146226171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     rkeksL+lltq+f+kl+ +s+++ ++l+++a++L+ +      +++k+RR+YDi+NV++++nl+ek     + k+++rw g
  XP_024975659.1 146 RKEKSLGLLTQNFIKLFISSNADLISLDTAATALLGDihdptAMRTKVRRLYDIANVFSSMNLLEKmrhpeSGKPAFRWLG 226
                     79****************************************************************9999999******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MASLHDTETK NPSLYSRKEK SLGVLCSNFL RLYNRDGVES IGLDNAASQL GVERRRIYDI  60
VNILESVGVL TRKAKNQYTW KGFNAIPYAL EELRKQASNE NSRGSQYCSF GTVLNENDCR  120
GPSNSNNSNT DRHTKSSGSS KSENNRKEKS LGLLTQNFIK LFISSNADLI SLDTAATALL  180
GDIHDPTAMR TKVRRLYDIA NVFSSMNLLE KMRHPESGKP AFRWLGLKGD PKTKSQTLDT  240
NNSKRRAFGT DITNHDDSKR HRIDSFSDWS SKEVSVAMHM NLDSVKVECD ENLTMPPQCN  300
SKEFVFGPFT PATAHKIGPS GNKKIKQAQD WENLADTYRP QYRNKVLGDL FGHYAEAWKS  360
WYAEAAEKKQ VQPVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-99E2F/DP family protein