PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975516.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 281aa    MW: 31851.3 Da    PI: 7.1673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000155173123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_024975516.1 51 YTCSFCRREFRSAQALGGHMNVH 73
                    9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MDQSRSYWIQ KDRTCLNSHV LSSFGDSWEE QAFAEDAAGP LGGCIWPPRS YTCSFCRREF  60
RSAQALGGHM NVHRRDRARL KQISSPKANQ VLEPNSSLSR CMLQNPNEIC NPNFDLDHTL  120
FSSSSPRPST VSILTPFTCS FAQEDQKGST PVLSWSKFES RKRFHLDDLG NQDKSCTKVL  180
EANSTTSKKS NHQIEVHFSG NLNSLVRRRC ETPIYNDKDE PNDGLFSKRR RTDDDAHSFF  240
AKNSDTMVNG DEAESLLPVE RSPNSTLENL DLELRLGDRP K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-28C2H2 family protein