PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975456.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 407aa MW: 45537.8 Da PI: 6.976

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.3	1.2e-06	5	35	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +++ + l+C+ ++ lC C ++ H+ XP_024975456.1 5 LCDFCNHRSAVLYCKADSAKLCLFCDTTVHS 35 7***************************995 PP
2	zf-B_box	21.4	5.3e-07	46	90	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+++ + ++ C +++ llC +C H + Ht+ p XP_024975456.1 46 SQICDNCASDAVSVACSTDNLLLCTSCDNDFHADsslstyHTRFP 90 689****99*******************7678888888655 PP
3	CCT	61.1	3.7e-21	363	405	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R +a+lRYkeK+ktR++eK irYesRKa+A++R+RvKGrFvk XP_024975456.1 363 RCNAMLRYKEKKKTRRYEKCIRYESRKARADTRKRVKGRFVKT 405 6789*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MSSSLCDFCN HRSAVLYCKA DSAKLCLFCD TTVHSANALS LKHFRSQICD NCASDAVSVA 60 CSTDNLLLCT SCDNDFHADS SLSTYHTRFP IHDFSGCPSP LQLASIWGFS LKLHPSSSNA 120 KSNNFHHSHD KPPPPPPYDE VPSVDWKSSA SPSGVHNKLL YQQLLELANQ GSDADGPELR 180 PQTPTGCGPP EISQGFEYEE HDDKDLLHQQ TPLTYLLMTP HNPSNSKPNN GSITEFSNMW 240 SYSPKRQTSQ IWDFNLGRSR SSEAGCDNPG FAVNNCTDLV EDASFTTMEV LKEMDAINIS 300 FTTNPSQNKQ ISGCRSTLEC DKRTPSERQM MENKISNWSM DGEQGMEIAA ASKVDAQQLA 360 QNRCNAMLRY KEKKKTRRYE KCIRYESRKA RADTRKRVKG RFVKTME

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MSSSLCDFCN HRSAVLYCKA DSAKLCLFCD TTVHSANALS LKHFRSQICD NCASDAVSVA  60
CSTDNLLLCT SCDNDFHADS SLSTYHTRFP IHDFSGCPSP LQLASIWGFS LKLHPSSSNA  120
KSNNFHHSHD KPPPPPPYDE VPSVDWKSSA SPSGVHNKLL YQQLLELANQ GSDADGPELR  180
PQTPTGCGPP EISQGFEYEE HDDKDLLHQQ TPLTYLLMTP HNPSNSKPNN GSITEFSNMW  240
SYSPKRQTSQ IWDFNLGRSR SSEAGCDNPG FAVNNCTDLV EDASFTTMEV LKEMDAINIS  300
FTTNPSQNKQ ISGCRSTLEC DKRTPSERQM MENKISNWSM DGEQGMEIAA ASKVDAQQLA  360
QNRCNAMLRY KEKKKTRRYE KCIRYESRKA RADTRKRVKG RFVKTME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	5e-63	CO-like family protein