PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973831.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 494aa    MW: 55203.7 Da    PI: 6.5486
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973831.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.73.7e-1061324881374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l+++L+ecA a+s ++l +a++++ +l ++asp+  +  +R++ayf++A+a+r+++s+ + ++ l+         +    a+++f+++sP++kf+
  XP_024973831.1 132 LISVLFECAVAISVDNLGEAHRMVLELTQMASPYSpSCGERVVAYFAKAMASRVVNSWLGFCSPLTNH-------KLIHGAFQVFNNISPFVKFA 219
                     5789*******************************8889*****************999998655433.......4456799************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t NqaIlea+++++rvHi+D+di+qGlQWpaL++ La+R egpp++R+Tg+g     s + l etg++L++fA++lg++fef++ vak++ d+
  XP_024973831.1 220 HFTSNQAILEAFQHQDRVHIVDLDIMQGLQWPALFHILATRLEGPPHVRMTGMGT----SMDLLVETGKQLSNFAKRLGMSFEFHP-VAKKFGDV 309
                     *******************************************************....***************************.57777666 PP

            GRAS 190 .eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++++L++++g+ala+++    h+l+d +++  +    +++l+++l+P+++++veq++ h  +sFl+rf+ +l+yysa+fdsl a  p+++++r+
  XP_024973831.1 310 aDISTLQIRRGDALAIHWLQ--HSLYDATGTDWK----TMRLFQELNPRIITLVEQDIAH-XGSFLDRFVGSLHYYSAIFDSLGALHPSDDNNRH 397
                     59*****************9..999988888888....**********************.889******************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vE++l++rei nv+a  g  r  +  +++ Wr+ le+ GF +vp+s++  +qa+l+l++++  +gy++ + +g+l lgWk+ +L++ SaW+
  XP_024973831.1 398 RVEHALIHREINNVLAVGGPGRSGED-KFKVWRSELERNGFLQVPMSSSSLAQAQLILNMFPpTHGYSLVQVDGTLRLGWKETALYTGSAWT 488
                     *********************77665.5***************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    
MRAGFEVVQG ALELIQPHEQ WDYNNTLGAN YTSTTTSTSL INGFADYSSK PSANLERPGE  60
LSEWVEHVTK TLIEDLPESN PEESFQTDVT LPAYHAISRN MQCETRPRKL ARVNGPSBEG  120
QFGDQGNKGL SLISVLFECA VAISVDNLGE AHRMVLELTQ MASPYSPSCG ERVVAYFAKA  180
MASRVVNSWL GFCSPLTNHK LIHGAFQVFN NISPFVKFAH FTSNQAILEA FQHQDRVHIV  240
DLDIMQGLQW PALFHILATR LEGPPHVRMT GMGTSMDLLV ETGKQLSNFA KRLGMSFEFH  300
PVAKKFGDVA DISTLQIRRG DALAIHWLQH SLYDATGTDW KTMRLFQELN PRIITLVEQD  360
IAHXGSFLDR FVGSLHYYSA IFDSLGALHP SDDNNRHRVE HALIHREINN VLAVGGPGRS  420
GEDKFKVWRS ELERNGFLQV PMSSSSLAQA QLILNMFPPT HGYSLVQVDG TLRLGWKETA  480
LYTGSAWTCQ RSSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-138GRAS family protein