PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972806.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 485aa MW: 54390.7 Da PI: 6.3083

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.2e-06	242	263	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H XP_024972806.1 242 FCVICGKGFKRDANLRMHMRGH 263 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MDSRKKQLSS DTWAKASSSN ESCQDHNQQQ QQMENENSSI LDYDLMIRKQ LETIPSSLTQ 60 IKLLAQQDLE DKNKAQLWDP RTMLTNLSIM EQKIHQLQEL VQLIVGRTAK SSIGQPNELL 120 IQQQQLVTAD LTSIIVQLIS TAGSLLPSVK HPHFAANPSV GDGLLPSDDN SKDNNDNIDS 180 YTNKNMVHKV EDQSNESDHM DVHEEHESKD DDDVDDGENI PPGSYEILQL EKEEILAPHT 240 HFCVICGKGF KRDANLRMHM RGHGDEYKTP AALAKPHKDT GSEPKLIKRY SCPFVGCKRN 300 KDHKKFQPLK TILCVKNHYK RTHCDKSYTC SRCNTKKFSV IADLKTHEKH CGRDRWLCSC 360 GTTFSRKDKL FGHISLFQGH TPALQLDEPK GGTVSAHDQG NNNLEVPTEV GFFDFNFNPN 420 SNGCGGSGVQ MGGDPSACFS PLNMDGFQEF PRTLFEDSDS FSFLVSGSCN YLWKNGGESS 480 SKDLQ

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MDSRKKQLSS DTWAKASSSN ESCQDHNQQQ QQMENENSSI LDYDLMIRKQ LETIPSSLTQ  60
IKLLAQQDLE DKNKAQLWDP RTMLTNLSIM EQKIHQLQEL VQLIVGRTAK SSIGQPNELL  120
IQQQQLVTAD LTSIIVQLIS TAGSLLPSVK HPHFAANPSV GDGLLPSDDN SKDNNDNIDS  180
YTNKNMVHKV EDQSNESDHM DVHEEHESKD DDDVDDGENI PPGSYEILQL EKEEILAPHT  240
HFCVICGKGF KRDANLRMHM RGHGDEYKTP AALAKPHKDT GSEPKLIKRY SCPFVGCKRN  300
KDHKKFQPLK TILCVKNHYK RTHCDKSYTC SRCNTKKFSV IADLKTHEKH CGRDRWLCSC  360
GTTFSRKDKL FGHISLFQGH TPALQLDEPK GGTVSAHDQG NNNLEVPTEV GFFDFNFNPN  420
SNGCGGSGVQ MGGDPSACFS PLNMDGFQEF PRTLFEDSDS FSFLVSGSCN YLWKNGGESS  480
SKDLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-164	C2H2 family protein