PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972731.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 462aa    MW: 52758.1 Da    PI: 6.8472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972731.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.16.1e-89784561374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl  A+ +++++ e a + L++l + +s +gd++qR+aayf+ +Laarl+   s   + +  ++t+    ++e+ a+  +++vsP+++f+h
  XP_024972731.1  78 LIHLLLVSATSLDENKIESAVENLKELYQDVSLNGDSVQRVAAYFADGLAARLLTRRSPFHEMIMKEPTP----EDEFLAYIELYKVSPYYQFAH 168
                     689***************************************************9666666666655555....788889999************ PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNqaI+ea+e+e     +++H+iD+di +G+QWp+L+q+L++++  ++  sl iTg+g+      e leet+ rL +fA+++ +++fef+   
  XP_024972731.1 169 FTANQAIMEAFEREekdnnRALHVIDLDIAYGFQWPSLMQSLSDKAttGNRVSLLITGFGR----TLEHLEETKARLVSFAKTFrNLNFEFEG-K 258
                     ************9977777789*********************999867777*********....99***************9857******9.4 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +  ++  l+++  k++E+++Vn+v+ l +l+    + + +++e+Lk +  l+P +vv+veqe  ++  +Fl rf+e l+yy+a+fdsl+  lp 
  XP_024972731.1 259 LR--SCSGLRSITKKKNETVVVNSVFYLNSLH----NFT-HISETLKSIHILNPSIVVLVEQEGGRSPRTFLSRFMEFLHYYAAMFDSLDDFLPL 346
                     44..555669******************9998....222.24579************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve............eesgslv 359
                     ++ +r  +E+  lg+ei+ +     +e    + e++e+W+ r+e+ GF+ ++ls+k   qaklll+  +     ++             e+g ++
  XP_024972731.1 347 DNPQRLQIEKNHLGKEIKRLMDLDDDEsNSPKYERMETWKGRFENHGFSGMNLSSKSIIQAKLLLKISSHY-CPIQfggenggfcafeREEGNAI 440
                     *********************999999456799********************************854422.22222232333434444455555 PP

            GRAS 360 .lgWkdrpLvsvSaWr 374
                      l W+d+ L+++SaW+
  XP_024972731.1 441 sLAWQDKCLITASAWE 456
                     5**************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    
MEGLEDERRL SLGLAIVIDS GRKMKRKRKE VFRASEIVNG VSEGKILSLL ETREMMLKKE  60
NKRKEANNNG EDGKGLHLIH LLLVSATSLD ENKIESAVEN LKELYQDVSL NGDSVQRVAA  120
YFADGLAARL LTRRSPFHEM IMKEPTPEDE FLAYIELYKV SPYYQFAHFT ANQAIMEAFE  180
REEKDNNRAL HVIDLDIAYG FQWPSLMQSL SDKATTGNRV SLLITGFGRT LEHLEETKAR  240
LVSFAKTFRN LNFEFEGKLR SCSGLRSITK KKNETVVVNS VFYLNSLHNF THISETLKSI  300
HILNPSIVVL VEQEGGRSPR TFLSRFMEFL HYYAAMFDSL DDFLPLDNPQ RLQIEKNHLG  360
KEIKRLMDLD DDESNSPKYE RMETWKGRFE NHGFSGMNLS SKSIIQAKLL LKISSHYCPI  420
QFGGENGGFC AFEREEGNAI SLAWQDKCLI TASAWECAGG RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12230RKMKRKRKE
22262RKMKRKRKEVFRASEIVNGVSEGKILSLLETREMMLKKENK
32565RKMKRKRKEVFRASEIVNGVSEGKILSLLETREMMLKKENK
42666RKMKRKRKEVFRASEIVNGVSEGKILSLLETREMMLKKENK
55763LKKENKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.14e-52GRAS family protein