PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971834.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 373aa    MW: 42227.6 Da    PI: 8.1487
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.6e-391332882132
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec............. 73 
                     a k+drhski+T++g+RdRR+Rls+++a+++F Lqd L fdk+skt++WLl+++k+ai+el  +          s+ss sec             
  XP_024971834.1 133 ASKRDRHSKIYTARGPRDRRMRLSLDVAKKLFGLQDLLEFDKASKTVDWLLTKSKAAIQELLPDrrcsfmdvsnSASSTSECevlsgtgdqsmvk 227
                     789*******************************************************************9987444445665554422111122 PP

             TCP  74 ..eaesssssasnsssg.............kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                       +             +              ++k+++k ++ ++sa+ ++ lak +r++ar+rarert ek  +
  XP_024971834.1 228 tgD-------------DqttannkaksssrCSKKQQEKINRIRRSANLHHPLAKATRERARERARERTIEKRYN 288
                     211.............012233444445433334444788888899999*******************999765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MYPSSNSNGS RASFFGNYYN DTNHSRTPQE HYYTPSSSSS FLLPSPNYIP LEDEAVFCGL  60
FQQQQLFTND HNYHNTSVLA HEHSTHEMTT NVESAMGECS NNNGQVATND RDDDPYGFNT  120
HVEPENSSLR KRASKRDRHS KIYTARGPRD RRMRLSLDVA KKLFGLQDLL EFDKASKTVD  180
WLLTKSKAAI QELLPDRRCS FMDVSNSASS TSECEVLSGT GDQSMVKTGD DQTTANNKAK  240
SSSRCSKKQQ EKINRIRRSA NLHHPLAKAT RERARERARE RTIEKRYNML VVGGQDSKFR  300
PCLDQIMDQD ANLLGSWIPF EESQHQSIVQ PDQNSSQFQL KKGFVGDNSS LMMAGNWSPS  360
YLLNYLHSTG LNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271281RERARERARER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-24TCP family protein