PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971326.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 403aa    MW: 45393.2 Da    PI: 8.4645
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.92.9e-411392993134
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.....eaesss 79 
                      kkdrhski T++g+RdRR+Rls+++a++fF Lqd+LGfdk+s+tieWLl ++k ai++l  +             s+ssasec           
  XP_024971326.1 139 SKKDRHSKINTARGPRDRRMRLSLDVAKKFFRLQDMLGFDKASNTIEWLLMKSKSAIQDLIPQqlnqssslmggsnSASSASECevlsgF----- 228
                     69*************************************************************887777777776655555666444221..... PP

             TCP  80 ssasnsssg...................kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134
                       +s                        ++ k+++   +  +ksa+ +  lake+r+kararar+rt+ek ++k 
  XP_024971326.1 229 DDQS----MeiagedqlmaidkvkaascSSTKEKKsLDRGLKKSAHIHYPLAKETREKARARARKRTTEKINNKL 299
                     2211....12344555778999999877555555546777788888899*********************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MYPSSNSNRS CTAFSSINQP TTSFCNYNHE NHSKPSQDHS QPPSFASFQL YYPHYIPLED  60
GPMSPEFFQQ QQPFSNHNSY HDTGVVAHEH STCDTTNVQS TMENSNYNNG KFVTVDGRNQ  120
HVNSHVILEN SYLTGKRSSK KDRHSKINTA RGPRDRRMRL SLDVAKKFFR LQDMLGFDKA  180
SNTIEWLLMK SKSAIQDLIP QQLNQSSSLM GGSNSASSAS ECEVLSGFDD QSMEIAGEDQ  240
LMAIDKVKAA SCSSTKEKKS LDRGLKKSAH IHYPLAKETR EKARARARKR TTEKINNKLS  300
DAGCDQYSKL RPSLDQIMDQ NVNRLGSCIS FRENQVQTDQ PQYPSSRFQL IKQGVVGDNA  360
SVIPGSWSPS SLFNYQHNPV PSHEHDQLSD FQINGKPWEG NNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-24TCP family protein