PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971123.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 272aa MW: 30755.8 Da PI: 8.0925

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	127	181	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_024971123.1 127 RKKLRLTKEQSFVLEETFKQHSTLNPKRKQSLAESLNLRPRQVEVWFQNRRARTK 181 78889************************************************98 PP
2	HD-ZIP_I/II	119.8	1.4e-38	127	215	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq+ +LEe+F+++++L+p+rK++la++L+l+prqv+vWFqnrRARtk+kq E+d++ Lk++++al+++n+rL++e +eL++ XP_024971123.1 127 RKKLRLTKEQSFVLEETFKQHSTLNPKRKQSLAESLNLRPRQVEVWFQNRRARTKLKQNEVDCALLKKCCEALASDNKRLKTEIQELKA 215 69*************************************************************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MVPEVSCITS LNLSLTGDHS YPINHLLDLH DHDLDQQHHH QQLEEKSSIM YDHLLPSLTL 60 GLGRDQDPSK LIHQATSNSI VSTVSSFSNS TSAKRVERDG GGEEVEKTLS SKTINDIDQD 120 EFEGGSRKKL RLTKEQSFVL EETFKQHSTL NPKRKQSLAE SLNLRPRQVE VWFQNRRART 180 KLKQNEVDCA LLKKCCEALA SDNKRLKTEI QELKAGKTTT ISPQFYMQFP AATQTMCPSC 240 ERIVSGSDTT MPFKTPFSRA PKSLAHRFTQ LC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	SRKKLRL
2	176	184	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	2e-55	HD-ZIP family protein