PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970677.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 351aa    MW: 39423.6 Da    PI: 8.2504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20168217255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  XP_024970677.1 168 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 217
                     7********.**********7.....337*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MLTPKRFLSI QSSIELHSFC PNYTHPPWIF LCYFMWLIKV ANPTDSGDFV SFRSSKKHRE  60
DGGAPPSPEI SFSKDHYSFS DEMSVMVTAL THVISGHTSS AISSPSFPAD RSPSSAYSSS  120
SSGSFKRLRD QDETTFVVKE EKEEEAPSST TTAADANPYN NGGEMRRRYR GVRQRPWGKW  180
AAEIRDPHKA ARVWLGTFET AEAAARAYDE AALRFRGNRA KLNFPENVVM LPPHPITINP  240
NSPTTQSITG HQPSPPLQPR HFQIPAVVTD YRRYSQLSRN SLVQQQQTEM SNPSSLESQS  300
FVSNSNSSST LRPQLYPNQA LHYHFGYTNE ERSTDFEAAP PSSWPGSRDH S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-26ERF family protein