PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024970317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 239aa MW: 26275.9 Da PI: 10.4042 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 181.6 | 1.5e-56 | 64 | 200 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 s++k+kaal+ +v+ptf++ldsg +k++r+G+++l++ +a++erkyd ekkq fals+te++++++l++++sceffhdp++k+ ++G+vrk+l+ XP_024970317.1 64 SIFKGKAALSAAPVLPTFSKLDSGYTKVERRGTIMLTFRPAIGERKYDSEKKQLFALSVTEIGSFISLGPQDSCEFFHDPSMKSRDAGQVRKSLS 158 79********************************************************************************************* PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 ++P++dG +f++lsvtn++++ ++f+vPv+ aefav+r +++ XP_024970317.1 159 IKPITDG--YFISLSVTNNVLNRTDRFTVPVTTAEFAVMRAAFS 200 ******5..9******************************9985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence |
MNPRAMVKLS QLLNSRNKLS QHKLLGESIG NCFKLTSSAA GISTSRQSYG ADGKISGRIF 60 ADYSIFKGKA ALSAAPVLPT FSKLDSGYTK VERRGTIMLT FRPAIGERKY DSEKKQLFAL 120 SVTEIGSFIS LGPQDSCEFF HDPSMKSRDA GQVRKSLSIK PITDGYFISL SVTNNVLNRT 180 DRFTVPVTTA EFAVMRAAFS FALPHIMGWA HSTNQHSNNV GQDFSKVHPQ LAAASEWDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71260.1 | 6e-83 | Whirly family protein |