PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969904.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 265aa    MW: 30204.8 Da    PI: 9.7311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-072571347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT e    +  a + + ++   +W+ +a+ ++ g++++++k  +  +
   XP_024969904.1 25 QWTDEQNTWFESALAIFDTEtpdRWSNVAALVP-GKSEYDVKKQYEVL 71
                     7********************************.********999765 PP
2Myb_DNA-binding45.41.8e-14125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + + +G+g+Wk+I+r +  ++t+ q+ s+ qky
   XP_024969904.1 125 PWTEEEHRRFLMGLQVHGKGDWKSISRNFVMTKTPTQVASHAQKY 169
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
METLSPSSNS LSSSNKVMQD TKNKQWTDEQ NTWFESALAI FDTETPDRWS NVAALVPGKS  60
EYDVKKQYEV LKADINNIEA GLVPIPGYFS SSFKLELVED HGFSIFRKRP SKFRSLDQEK  120
RKGVPWTEEE HRRFLMGLQV HGKGDWKSIS RNFVMTKTPT QVASHAQKYY ARLNADGKEK  180
RRPSIHDITM INLPDNTNSP DGSDRSSKSL GLPKGLLHWN NSSEETVMTY PFEIAKLNRN  240
GGNGMNIRVY NSGLHFQPTR YQVQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-71MYB family protein