PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969316.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

E2F/DP

Protein Properties

Length: 447aa MW: 49904.7 Da PI: 4.5203

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.2	2.5e-27	132	197	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg XP_024969316.1 132 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 197 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MQQQHNHKHP FLKRQLPFTS MKPPPFGDYH RFSTSSSTTA GHHESEAIVV KSPLLKRKGD 60 AATFEAESNE QNPNPGNALA ISSPLQTPMS GKLSKAQKIP RIGKCNRAGS QTSATNTDSP 120 SGNNLTPVGP CRYDSSLGLL TKKFINLIKH AEDGILDLNK AAETLEVQKR RIYDITNVLE 180 GIGLIEKKLK NRIQWKGLDA STGEVDENIT SLQAEVENLS VEELRLDEQT RDMQERLRDL 240 SEDENNQKWL FVTEEDIKSL PCFQEETLIA IKAPHGTTLE VPDPDEAVDY PQRRYRIVLR 300 STMGPIDVYL VSQFEEKLEE MNRAEPNSSI PSMMEMIENP TTETAMEASQ EHGVGMQTTD 360 TQACSDVNAS EDFVSGIMKI VPNIDSDADY WLLSDADVSI TDMWRTESSV EWNDMGMLPN 420 DYDMPVVTTP HPQTPTSEMH SDANPTG

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MQQQHNHKHP FLKRQLPFTS MKPPPFGDYH RFSTSSSTTA GHHESEAIVV KSPLLKRKGD  60
AATFEAESNE QNPNPGNALA ISSPLQTPMS GKLSKAQKIP RIGKCNRAGS QTSATNTDSP  120
SGNNLTPVGP CRYDSSLGLL TKKFINLIKH AEDGILDLNK AAETLEVQKR RIYDITNVLE  180
GIGLIEKKLK NRIQWKGLDA STGEVDENIT SLQAEVENLS VEELRLDEQT RDMQERLRDL  240
SEDENNQKWL FVTEEDIKSL PCFQEETLIA IKAPHGTTLE VPDPDEAVDY PQRRYRIVLR  300
STMGPIDVYL VSQFEEKLEE MNRAEPNSSI PSMMEMIENP TTETAMEASQ EHGVGMQTTD  360
TQACSDVNAS EDFVSGIMKI VPNIDSDADY WLLSDADVSI TDMWRTESSV EWNDMGMLPN  420
DYDMPVVTTP HPQTPTSEMH SDANPTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-149	E2F/DP family protein