PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968926.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 655aa MW: 73154.1 Da PI: 7.2294

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHir+H XP_024968926.1 77 KCDKCAREFCSPINYRRHIRVH 98 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MPVAKLLGTS SADAMKAEEG SDSLDTFIRQ AVGKEPLFSF SRTGDSPMQW IQLLHALDQQ 60 DLPGWPLLTP MKVQMQKCDK CAREFCSPIN YRRHIRVHRR SLNFHKESQK YRDLLGAFWD 120 KLSYEDAKDI MSFKDVNLEE VAGSSIVRNI TANLRKPIFL SLPQVYVKAG SVLVDIIQGR 180 PSRLPISSQE LFSILDDASE RTFLSAGTAE SLQKFIFDGE AGKIGLEIKN LIACTSFLAE 240 QRLVKAWLAD KDAEALRCQK LLVEEEEAAQ RRQAEILERK RQRKLRQKEQ RARDQSNEVK 300 GDLYAASDVF ETTPSTETSS LPTSSGVDLL IPDEDVLMPL ETIQFSNNEE DVNIESQGGC 360 SSDHSDSTAQ NNTKHPKAQT NDLHHLVTRW QVPKLQKGGR NGFHGNQNVN TLKREQSHKH 420 REQRAPLVNS SKIWTKKPKP ENGGELVKSR VQNDAINQSN CQLMIGSISV TVRSPSQHQA 480 NNQANEVQES GNMEVKKSSV QTGTNRSTVK IWRPRHDSRG QLADSRSNKV MEEDAKGDIE 540 IPTATESCCQ SNDETDECQP LPFVEDGGKP EAMLFSVDAA KAFLAQRWKE AISGDHSKLV 600 LAEPPGEGDG HESQERAENR IVSMESSSHN TNVRGKFATK GVKTKYIPKQ RGGGN

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MPVAKLLGTS SADAMKAEEG SDSLDTFIRQ AVGKEPLFSF SRTGDSPMQW IQLLHALDQQ  60
DLPGWPLLTP MKVQMQKCDK CAREFCSPIN YRRHIRVHRR SLNFHKESQK YRDLLGAFWD  120
KLSYEDAKDI MSFKDVNLEE VAGSSIVRNI TANLRKPIFL SLPQVYVKAG SVLVDIIQGR  180
PSRLPISSQE LFSILDDASE RTFLSAGTAE SLQKFIFDGE AGKIGLEIKN LIACTSFLAE  240
QRLVKAWLAD KDAEALRCQK LLVEEEEAAQ RRQAEILERK RQRKLRQKEQ RARDQSNEVK  300
GDLYAASDVF ETTPSTETSS LPTSSGVDLL IPDEDVLMPL ETIQFSNNEE DVNIESQGGC  360
SSDHSDSTAQ NNTKHPKAQT NDLHHLVTRW QVPKLQKGGR NGFHGNQNVN TLKREQSHKH  420
REQRAPLVNS SKIWTKKPKP ENGGELVKSR VQNDAINQSN CQLMIGSISV TVRSPSQHQA  480
NNQANEVQES GNMEVKKSSV QTGTNRSTVK IWRPRHDSRG QLADSRSNKV MEEDAKGDIE  540
IPTATESCCQ SNDETDECQP LPFVEDGGKP EAMLFSVDAA KAFLAQRWKE AISGDHSKLV  600
LAEPPGEGDG HESQERAENR IVSMESSSHN TNVRGKFATK GVKTKYIPKQ RGGGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	285	ERKRQRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-130	C2H2 family protein