PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968496.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WOX

Protein Properties

Length: 290aa MW: 31330.9 Da PI: 6.0259

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.6	1.3e-15	32	92	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ XP_024968496.1 32 RSRWTPKPEQILILESIFNSgMVNPPKDETVKIRKLLekfgSVGDANVFYWFQNRRSRSRR 92 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.6	1.6e-34	31	94	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ +i++ Le++G ++d+NVfyWFQNr++R+r++q XP_024968496.1 31 VRSRWTPKPEQILILESIFNSGMVNPPKDETVKIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 94 589***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MEDQAQAQTQ TQTPPPTSPR TQCLERNHEP VRSRWTPKPE QILILESIFN SGMVNPPKDE 60 TVKIRKLLEK FGSVGDANVF YWFQNRRSRS RRRQRQIQAN LVSSEQQQSS MVTRCVSGGG 120 DGGSSSGGGG GGDGAIQYQD AAYTTATPGF VMQQPPSFFP LLQSLPPPPG SNSSSSSTSS 180 RLGGADEIYP VSSQAASFPE IEQNPNSMPS SFQHLDTSKV HYEFASGVIT VFINGVPTEV 240 ESGPFNMKAL FGEDLMLVHS SGVPVPLSES GVCALGLQHG ESYFLVSRSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.1	3e-33	WOX family protein