PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967964.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CPP

Protein Properties

Length: 613aa MW: 66294.4 Da PI: 7.2597

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.7	1.3e-14	143	182	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e+ XP_024967964.1 143 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCHNNVEN 182 89************************.******9875 PP
2	TCR	50.8	3.2e-16	227	266	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_024967964.1 227 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 266 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MEKGEGGGDL NFPPKKTQTE ATAAAVPTTA TDFPAAKKLA RQLDFNSVGG SASVTATTVV 60 LPEHPQRLVV AQMQQPPPTL SQPKLPPPQQ QPPQPHPIPL MPSMQPSHSA TTHQQPPIRP 120 VKSESPKARP RQNVEIKDGT PKKQKQCNCK HSRCLKLYCE CFASGIYCDG CNCVNCHNNV 180 ENEPARRDAV ETTLERNPNA FRPKIASSPH GNRDNREEAG EVVILGKHNK GCHCKKSGCL 240 KKYCECFQAN ILCSENCKCM DCKNFEGSEE RQALFHGDSA NNIAYLQQAA NAAITGAIGS 300 SGYGSPPVSR KRKAQELFFG GPLEKDSSVH RLAPFQQTNH IKTSAPSSSL SPIPGPRVAN 360 VAPVGPSKFT YRSLLADLIR PDDMKELCSV LVVYSNEAAR MLADDQRENS DASALKDRIQ 420 SQKEPDTEKV VADEPSGGAQ TDKMSPDESS SDGADASKGR PMSPGTLALM CDEQDTVFTT 480 STSNGLGADG ADAPSHLPNG QVVTETYAVQ EKMVLTAFRD CLNRLITFGE LKETQCSSLA 540 RSDSGGQSQM EVVESNTIMH TGQTTSQREP FSNGFPRSAV LAPQTAFENN GTHLKIPFRN 600 ENGELKLKAE KEI

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MEKGEGGGDL NFPPKKTQTE ATAAAVPTTA TDFPAAKKLA RQLDFNSVGG SASVTATTVV  60
LPEHPQRLVV AQMQQPPPTL SQPKLPPPQQ QPPQPHPIPL MPSMQPSHSA TTHQQPPIRP  120
VKSESPKARP RQNVEIKDGT PKKQKQCNCK HSRCLKLYCE CFASGIYCDG CNCVNCHNNV  180
ENEPARRDAV ETTLERNPNA FRPKIASSPH GNRDNREEAG EVVILGKHNK GCHCKKSGCL  240
KKYCECFQAN ILCSENCKCM DCKNFEGSEE RQALFHGDSA NNIAYLQQAA NAAITGAIGS  300
SGYGSPPVSR KRKAQELFFG GPLEKDSSVH RLAPFQQTNH IKTSAPSSSL SPIPGPRVAN  360
VAPVGPSKFT YRSLLADLIR PDDMKELCSV LVVYSNEAAR MLADDQRENS DASALKDRIQ  420
SQKEPDTEKV VADEPSGGAQ TDKMSPDESS SDGADASKGR PMSPGTLALM CDEQDTVFTT  480
STSNGLGADG ADAPSHLPNG QVVTETYAVQ EKMVLTAFRD CLNRLITFGE LKETQCSSLA  540
RSDSGGQSQM EVVESNTIMH TGQTTSQREP FSNGFPRSAV LAPQTAFENN GTHLKIPFRN  600
ENGELKLKAE KEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-177	CPP family protein