PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967950.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 543aa MW: 58940.9 Da PI: 6.9025

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	1.9e-30	213	270	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers +k++ei+Y+g+H+h+k XP_024967950.1 213 EDGYNWRKYGQKVVKGSEFPRSYYKCTHPNCEVKKIFERSY-TGKITEIVYKGTHDHPK 270 8**************************************.9************85 PP
2	WRKY	104.8	4.7e-33	381	439	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Cts gCpv+k+ver+++dpk+v++tYeg+H+h+ XP_024967950.1 381 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSVGCPVRKHVERASHDPKAVITTYEGKHDHD 439 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MEDQNTSRSS TGGGGGGGGG GGARYKLMSP AKLPISRSTC ITIPPGLSPT SFLESPVLLT 60 NIKAEPSPTT GSFFKPQRMQ GSICSAAFSL NANCSMAKSL NDSESSFFEF KPHTMSASVS 120 GFSSAGLQVT AGFDFQRNEP SEKNQNQNEY RSYSSPSSAS CENAAPNEQN LAAPIYTLIE 180 ETNGLEVPKS VHLSDSGHKD SGPLVVPVDR SLEDGYNWRK YGQKVVKGSE FPRSYYKCTH 240 PNCEVKKIFE RSYTGKITEI VYKGTHDHPK PQPSRRLTPG ALTSIQEDNT DKVSSITGQA 300 GFSADNCPTP NSETSGTPVP SPDHVDRAEA QLNNTNDEVD DDDPYSKRRR TDFGTLEVTP 360 VVKPIREPRV VVQTISEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTSV GCPVRKHVER 420 ASHDPKAVIT TYEGKHDHDV PTARNGSHDG AGSAAGNGNL RTRSDDNGAV CLDLVVGNSL 480 SEQPQCLNSD YNKAQLACYG GVNGNMHVYR SRENDVEAHT YDISNLNRSN SYPQHLGSVL 540 LGP

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MEDQNTSRSS TGGGGGGGGG GGARYKLMSP AKLPISRSTC ITIPPGLSPT SFLESPVLLT  60
NIKAEPSPTT GSFFKPQRMQ GSICSAAFSL NANCSMAKSL NDSESSFFEF KPHTMSASVS  120
GFSSAGLQVT AGFDFQRNEP SEKNQNQNEY RSYSSPSSAS CENAAPNEQN LAAPIYTLIE  180
ETNGLEVPKS VHLSDSGHKD SGPLVVPVDR SLEDGYNWRK YGQKVVKGSE FPRSYYKCTH  240
PNCEVKKIFE RSYTGKITEI VYKGTHDHPK PQPSRRLTPG ALTSIQEDNT DKVSSITGQA  300
GFSADNCPTP NSETSGTPVP SPDHVDRAEA QLNNTNDEVD DDDPYSKRRR TDFGTLEVTP  360
VVKPIREPRV VVQTISEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTSV GCPVRKHVER  420
ASHDPKAVIT TYEGKHDHDV PTARNGSHDG AGSAAGNGNL RTRSDDNGAV CLDLVVGNSL  480
SEQPQCLNSD YNKAQLACYG GVNGNMHVYR SRENDVEAHT YDISNLNRSN SYPQHLGSVL  540
LGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.2	1e-155	WRKY family protein