PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967875.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 652aa MW: 71265.6 Da PI: 6.5104

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	7e-08	261	281	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg XP_024967875.1 261 PCPDFRK-GTCRRGDMCEYAHG 281 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MSHLTVVTGD AFATLLELAA NNDIEGFSQL IGSDPSGLDE VGLWYGRQKG SKQMVLEHRT 60 PLMVAAMYGS VDVLKLILSQ SKADVNRSCG VDKTTALHCA ASGGSLNAVE IIKLLLLAGA 120 DPNLIDVNGL RPVDVIVVSP KFPDKKKTLE ELLGVDGESS LLDSNLRSPS PENGSPVSES 180 DLVSSPKIST FSDNKREYPV DPSLPDIKNS IYSTDEFRMY SFKVRPCSRA YSHDWTECPF 240 VHPGENARRR DPRKYHYSCV PCPDFRKGTC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG 300 TSCNRRVCFF AHTQDELRPL FVSTGSAVPS PRSTNSGPNA LDFAAAMSLM PGSLSSFTPP 360 MSPSANGMSN MNWPQPNVPS LHLPGSNLQS SRLRSSLNAR DISDQDLNLQ LFNELSRQQR 420 AAHNQSILTP TKLDDIFAAE SSSPRFSDQS VYSPRHNSSV FNQFQQQQSM LSPINTNFSP 480 KNASFAVQSP GRMSPRSVEP ISPMSSRVSM LARENQHQQQ FRSLSSRELG SRSGAILGSA 540 VDPWSKWGPT GEKADWGVNA DDFGKLRRSS SFENGGNNGE EPDLSWVQSL VKETPQEMKE 600 KLAAFGGSGG EGSGNGGGSG SNSNTQIEQM DQSALSAWIE QMQLDHLVAQ QN

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MSHLTVVTGD AFATLLELAA NNDIEGFSQL IGSDPSGLDE VGLWYGRQKG SKQMVLEHRT  60
PLMVAAMYGS VDVLKLILSQ SKADVNRSCG VDKTTALHCA ASGGSLNAVE IIKLLLLAGA  120
DPNLIDVNGL RPVDVIVVSP KFPDKKKTLE ELLGVDGESS LLDSNLRSPS PENGSPVSES  180
DLVSSPKIST FSDNKREYPV DPSLPDIKNS IYSTDEFRMY SFKVRPCSRA YSHDWTECPF  240
VHPGENARRR DPRKYHYSCV PCPDFRKGTC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG  300
TSCNRRVCFF AHTQDELRPL FVSTGSAVPS PRSTNSGPNA LDFAAAMSLM PGSLSSFTPP  360
MSPSANGMSN MNWPQPNVPS LHLPGSNLQS SRLRSSLNAR DISDQDLNLQ LFNELSRQQR  420
AAHNQSILTP TKLDDIFAAE SSSPRFSDQS VYSPRHNSSV FNQFQQQQSM LSPINTNFSP  480
KNASFAVQSP GRMSPRSVEP ISPMSSRVSM LARENQHQQQ FRSLSSRELG SRSGAILGSA  540
VDPWSKWGPT GEKADWGVNA DDFGKLRRSS SFENGGNNGE EPDLSWVQSL VKETPQEMKE  600
KLAAFGGSGG EGSGNGGGSG SNSNTQIEQM DQSALSAWIE QMQLDHLVAQ QN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein