PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965701.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 359aa MW: 40895 Da PI: 9.2026

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.4	2.4e-15	44	103	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ ++ Aa a++ a++k++g XP_024965701.1 44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDEEDAAAHAYDLAALKYWG 103 57*****************999955656446******99***********98 PP
2	AP2	50.6	4.9e-16	146	197	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_024965701.1 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDMAAIEYRG 197 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MTKLLKQRLK IDEGTKMNTN SVVVTKAKRT RKTVPRDSPP RRSSIYRGVT RHRWTGRYEA 60 HLWDKNCWNE SQNKKGRQVY LGAYDEEDAA AHAYDLAALK YWGPDTILNF PLMTYHKELK 120 QMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT 180 QEEAAVAYDM AAIEYRGLNA VTNFDLSRYI KWLRPDNNNT VEVPPNPNIN IIDASVTPSA 240 NDDIGLNFLH NQPPQPVVEM VSPTVTATMP YPSRSTTATS ALGLLLQSSK FKEMMEMTTA 300 AEYTSTPSNS TIVPPCNKFP EEIQVHFESQ DFAGYNGGDD FIFGDLNFMH NMLHSDFDK

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MTKLLKQRLK IDEGTKMNTN SVVVTKAKRT RKTVPRDSPP RRSSIYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQVY LGAYDEEDAA AHAYDLAALK YWGPDTILNF PLMTYHKELK  120
QMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAAVAYDM AAIEYRGLNA VTNFDLSRYI KWLRPDNNNT VEVPPNPNIN IIDASVTPSA  240
NDDIGLNFLH NQPPQPVVEM VSPTVTATMP YPSRSTTATS ALGLLLQSSK FKEMMEMTTA  300
AEYTSTPSNS TIVPPCNKFP EEIQVHFESQ DFAGYNGGDD FIFGDLNFMH NMLHSDFDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-103	AP2 family protein