PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963953.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 434aa MW: 48103 Da PI: 6.3257

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.4	1e-07	371	404	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_024963953.1 371 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 404 569*****************************87 PP
2	ELK	28.8	2.8e-10	325	346	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_024963953.1 325 ELKHELKQGYKEKIVDIREEIL 346 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MAYHPNHISQ DMALQQHFSD TDNNSVLRTI LPEHHHLASA AQSPSSSRSA GKDHWLNSAI 60 LRQQGQFGGD GNNNNSNIFL NLQTNNNNSD SAATTSSQHH QQQSAVNVMS SHNSPDLNNH 120 SRNVAAGQVD NNVGGELGET EVGAGDGGGG ALMNWQNARQ KAEVLSHPLY EQLLAAHVAC 180 LRIATPVDQL PRIDAQLAQS QQVVSKYSAL GGHNNLVHDD KELDQFMTHY VLLLCSFKDQ 240 LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGTGATMS DDDEDQVDSD ANLYDGSLDG 300 HDSMGFGPLV PTESERSLME RVRQELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS 360 VLKAWWQSHA KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTVLKSKR 420 KSSNAGDRDG DHVM

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MAYHPNHISQ DMALQQHFSD TDNNSVLRTI LPEHHHLASA AQSPSSSRSA GKDHWLNSAI  60
LRQQGQFGGD GNNNNSNIFL NLQTNNNNSD SAATTSSQHH QQQSAVNVMS SHNSPDLNNH  120
SRNVAAGQVD NNVGGELGET EVGAGDGGGG ALMNWQNARQ KAEVLSHPLY EQLLAAHVAC  180
LRIATPVDQL PRIDAQLAQS QQVVSKYSAL GGHNNLVHDD KELDQFMTHY VLLLCSFKDQ  240
LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGTGATMS DDDEDQVDSD ANLYDGSLDG  300
HDSMGFGPLV PTESERSLME RVRQELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS  360
VLKAWWQSHA KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTVLKSKR  420
KSSNAGDRDG DHVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-174	TALE family protein